diff conf.cfg @ 0:7c9269bded0e draft

Init repository for [downloader_bank_hmdb]
author fgiacomoni
date Tue, 14 Jan 2020 05:21:23 -0500
parents
children be504ccbc41c
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/conf.cfg	Tue Jan 14 05:21:23 2020 -0500
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+## Conf file for downloader_bank_hmdb.pl script
+#
+## Version
+VERSION=1.1
+##v1.0 : Init
+##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks
+#
+## ARGVT
+PROTON_MASS=1.007825
+ELECTRON_MASS=0.0005486
+#CHARGE=1
+
+#LOCAL BANKS VERSIONNING
+LOCALBANK_PATH=banks
+
+#HMDB archive url
+HMDB_URL=
+## Serum
+SERUM_URL=http://www.hmdb.ca/system/downloads/current/serum_metabolites.zip
+SERUM_FILE_NAME=serum_metabolites.xml
+SERUM_HTTP_FORMAT=ZIP
+SERUM_DB_FORMAT=XML
+## Urine
+URINE_URL=http://www.hmdb.ca/system/downloads/current/urine_metabolites.zip
+URINE_FILE_NAME=urine_metabolites.xml
+URINE_HTTP_FORMAT=ZIP
+URINE_DB_FORMAT=XML
+## Other matrices:
+## CSF
+CSF_URL=http://www.hmdb.ca/system/downloads/current/csf_metabolites.zip
+CSF_FILE_NAME=csf_metabolites.xml
+CSF_HTTP_FORMAT=ZIP
+CSF_DB_FORMAT=XML
+##FECES
+FECES_URL=http://www.fecalmetabolome.ca/system/downloads/current/feces_metabolites.zip
+FECES_FILE_NAME=feces_metabolites.xml
+FECES_HTTP_FORMAT=ZIP
+FECES_DB_FORMAT=XML
+##SALIVA
+SALIVA_URL=http://www.salivametabolome.ca/system/downloads/current/saliva_metabolites.zip
+SALIVA_FILE_NAME=saliva_metabolites.xml
+SALIVA_HTTP_FORMAT=ZIP
+SALIVA_DB_FORMAT=XML
+##RUMEN
+RUMEN_URL=http://www.rumendb.ca/public/downloads/current/metabocards.gz
+RUMEN_FILE_NAME=metabocards
+RUMEN_HTTP_FORMAT=GZ
+RUMEN_DB_FORMAT=CARD
+##COW
+COW_URL=http://www.cowmetdb.ca/public/downloads/current/metabocards.gz
+COW_FILE_NAME=metabocards
+COW_HTTP_FORMAT=GZ
+COW_DB_FORMAT=CARD
+##MILK
+MILK_URL=http://www.mcdb.ca/system/downloads/current/milk_metabolites.zip
+MILK_FILE_NAME=milk_metabolites.xml
+MILK_HTTP_FORMAT=ZIP
+MILK_DB_FORMAT=XML
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