Mercurial > repos > fgiacomoni > downloader_bank_hmdb

annotate conf.cfg @ 0:7c9269bded0e draft

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Init repository for [downloader_bank_hmdb]
author fgiacomoni
date Tue, 14 Jan 2020 05:21:23 -0500
parents
children be504ccbc41c
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7c9269bded0e Init repository for [downloader_bank_hmdb]
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1 ## Conf file for downloader_bank_hmdb.pl script
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2 #
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3 ## Version
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4 VERSION=1.1
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5 ##v1.0 : Init
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6 ##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks
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7 #
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8 ## ARGVT
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9 PROTON_MASS=1.007825
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10 ELECTRON_MASS=0.0005486
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11 #CHARGE=1
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12
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13 #LOCAL BANKS VERSIONNING
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14 LOCALBANK_PATH=banks
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15
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16 #HMDB archive url
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17 HMDB_URL=
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18 ## Serum
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19 SERUM_URL=http://www.hmdb.ca/system/downloads/current/serum_metabolites.zip
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20 SERUM_FILE_NAME=serum_metabolites.xml
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21 SERUM_HTTP_FORMAT=ZIP
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22 SERUM_DB_FORMAT=XML
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23 ## Urine
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24 URINE_URL=http://www.hmdb.ca/system/downloads/current/urine_metabolites.zip
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25 URINE_FILE_NAME=urine_metabolites.xml
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26 URINE_HTTP_FORMAT=ZIP
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27 URINE_DB_FORMAT=XML
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28 ## Other matrices:
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29 ## CSF
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30 CSF_URL=http://www.hmdb.ca/system/downloads/current/csf_metabolites.zip
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31 CSF_FILE_NAME=csf_metabolites.xml
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32 CSF_HTTP_FORMAT=ZIP
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33 CSF_DB_FORMAT=XML
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34 ##FECES
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35 FECES_URL=http://www.fecalmetabolome.ca/system/downloads/current/feces_metabolites.zip
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36 FECES_FILE_NAME=feces_metabolites.xml
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37 FECES_HTTP_FORMAT=ZIP
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38 FECES_DB_FORMAT=XML
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39 ##SALIVA
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40 SALIVA_URL=http://www.salivametabolome.ca/system/downloads/current/saliva_metabolites.zip
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41 SALIVA_FILE_NAME=saliva_metabolites.xml
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42 SALIVA_HTTP_FORMAT=ZIP
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43 SALIVA_DB_FORMAT=XML
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44 ##RUMEN
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45 RUMEN_URL=http://www.rumendb.ca/public/downloads/current/metabocards.gz
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46 RUMEN_FILE_NAME=metabocards
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47 RUMEN_HTTP_FORMAT=GZ
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48 RUMEN_DB_FORMAT=CARD
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49 ##COW
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50 COW_URL=http://www.cowmetdb.ca/public/downloads/current/metabocards.gz
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51 COW_FILE_NAME=metabocards
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52 COW_HTTP_FORMAT=GZ
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53 COW_DB_FORMAT=CARD
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54 ##MILK
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55 MILK_URL=http://www.mcdb.ca/system/downloads/current/milk_metabolites.zip
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56 MILK_FILE_NAME=milk_metabolites.xml
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57 MILK_HTTP_FORMAT=ZIP
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58 MILK_DB_FORMAT=XML