Mercurial > repos > fgiacomoni > downloader_bank_hmdb
diff conf.cfg @ 0:7c9269bded0e draft
Init repository for [downloader_bank_hmdb]
author | fgiacomoni |
---|---|
date | Tue, 14 Jan 2020 05:21:23 -0500 |
parents | |
children | be504ccbc41c |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/conf.cfg Tue Jan 14 05:21:23 2020 -0500 @@ -0,0 +1,58 @@ +## Conf file for downloader_bank_hmdb.pl script +# +## Version +VERSION=1.1 +##v1.0 : Init +##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks +# +## ARGVT +PROTON_MASS=1.007825 +ELECTRON_MASS=0.0005486 +#CHARGE=1 + +#LOCAL BANKS VERSIONNING +LOCALBANK_PATH=banks + +#HMDB archive url +HMDB_URL= +## Serum +SERUM_URL=http://www.hmdb.ca/system/downloads/current/serum_metabolites.zip +SERUM_FILE_NAME=serum_metabolites.xml +SERUM_HTTP_FORMAT=ZIP +SERUM_DB_FORMAT=XML +## Urine +URINE_URL=http://www.hmdb.ca/system/downloads/current/urine_metabolites.zip +URINE_FILE_NAME=urine_metabolites.xml +URINE_HTTP_FORMAT=ZIP +URINE_DB_FORMAT=XML +## Other matrices: +## CSF +CSF_URL=http://www.hmdb.ca/system/downloads/current/csf_metabolites.zip +CSF_FILE_NAME=csf_metabolites.xml +CSF_HTTP_FORMAT=ZIP +CSF_DB_FORMAT=XML +##FECES +FECES_URL=http://www.fecalmetabolome.ca/system/downloads/current/feces_metabolites.zip +FECES_FILE_NAME=feces_metabolites.xml +FECES_HTTP_FORMAT=ZIP +FECES_DB_FORMAT=XML +##SALIVA +SALIVA_URL=http://www.salivametabolome.ca/system/downloads/current/saliva_metabolites.zip +SALIVA_FILE_NAME=saliva_metabolites.xml +SALIVA_HTTP_FORMAT=ZIP +SALIVA_DB_FORMAT=XML +##RUMEN +RUMEN_URL=http://www.rumendb.ca/public/downloads/current/metabocards.gz +RUMEN_FILE_NAME=metabocards +RUMEN_HTTP_FORMAT=GZ +RUMEN_DB_FORMAT=CARD +##COW +COW_URL=http://www.cowmetdb.ca/public/downloads/current/metabocards.gz +COW_FILE_NAME=metabocards +COW_HTTP_FORMAT=GZ +COW_DB_FORMAT=CARD +##MILK +MILK_URL=http://www.mcdb.ca/system/downloads/current/milk_metabolites.zip +MILK_FILE_NAME=milk_metabolites.xml +MILK_HTTP_FORMAT=ZIP +MILK_DB_FORMAT=XML \ No newline at end of file