Mercurial > repos > fgiacomoni > hmdb_ms_search
annotate Dockerfile @ 25:8f7546d0b925 draft
master branch Updating with tag :CI_COMMIT_TAG - - Fxx
author | fgiacomoni |
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date | Tue, 05 Jul 2022 12:39:15 +0000 |
parents | 453fbe98925a |
children | 76872ac24fb2 |
rev | line source |
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1 #FROM pfem/perlfull |
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2 FROM python:3.8-buster |
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3 |
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4 # set author |
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5 LABEL maintainer="franck.giacomoni@inrae.fr" |
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6 |
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7 ENV PLANEMO_VENV_LOCATION /planemo-venv |
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8 ENV CONDA /tmp/conda |
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9 |
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10 |
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11 RUN apt-get update &&\ |
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12 apt-get upgrade -y &&\ |
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13 apt-get install --no-install-recommends --yes build-essential \ |
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14 git \ |
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15 libgl1-mesa-glx \ |
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16 libegl1-mesa \ |
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17 libxrandr2 \ |
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18 libxss1 \ |
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19 libxcursor1 \ |
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20 libxcomposite1 \ |
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21 libasound2 \ |
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22 libxi6 \ |
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23 libxtst6 \ |
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24 python-virtualenv && \ |
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25 pip install virtualenv && \ |
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26 python3 -m virtualenv "$PLANEMO_VENV_LOCATION" && \ |
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27 . "$PLANEMO_VENV_LOCATION"/bin/activate && \ |
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28 pip install --upgrade pip setuptools && \ |
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29 pip install planemo numpy && \ |
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30 pip install -U planemo && \ |
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31 #planemo conda_init --conda_prefix "$CONDA" && \ |
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32 apt-get autoremove -y && \ |
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33 apt-get clean && \ |
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34 rm -rf /var/lib/apt/lists/* && \ |
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35 rm -rf /tmp/* && \ |
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36 rm -rf /var/tmp/* && \ |
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37 rm -rf /usr/bin/X11 ; |
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38 |
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39 CMD [] |