Mercurial > repos > florianbegusch > qiime2
changeset 2:a1446be8a7e6 draft
Deleted selected files
| author | florianbegusch |
|---|---|
| date | Wed, 23 May 2018 10:29:25 -0400 |
| parents | ff20c5c00ef0 |
| children | 1722a584c78c |
| files | qiime_alignment_mafft.xml |
| diffstat | 1 files changed, 0 insertions(+), 49 deletions(-) [+] |
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--- a/qiime_alignment_mafft.xml Wed May 23 10:22:44 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,49 +0,0 @@ -<?xml version="1.0" ?> -<tool id="qiime_alignment_mafft" name="qiime alignment mafft" version="2018.4"> - <description> - De novo multiple sequence alignment with MAFFT</description> - <requirements> - <requirement type="package" version="2018.4">qiime2</requirement> - </requirements> - <command><![CDATA[ - - qiime alignment mafft --i-sequences=$isequences - #set $pnthreads = '${GALAXY_SLOTS:-4}' - - #if str($pnthreads): - --p-n-threads="$pnthreads" - #end if - - #if str($cmdconfig) != 'None': - --cmd-config=$cmdconfig - #end if - - --o-alignment=oalignment; - - cp oalignment.qza $oalignment - -]]></command> - <inputs> - <param format="qza,no_unzip.zip" label="--i-sequences: FeatureData[Sequence] - The sequences to be aligned. [required]" name="isequences" optional="False" type="data"/> - <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/> - </inputs> - <outputs> - <data format="qza" label="${tool.name} on ${on_string}: alignment.qza" name="oalignment"/> - </outputs> - <help><![CDATA[ -De novo multiple sequence alignment with MAFFT ----------------------------------------------- - -Perform de novo multiple sequence alignment using MAFFT. - -Parameters ----------- -sequences : FeatureData[Sequence] - The sequences to be aligned. - -Returns -------- -alignment : FeatureData[AlignedSequence] - The aligned sequences. - ]]> -</help> -</tool>