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+ − 1 <?xml version="1.0" ?>
+ − 2 <tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis" version="2018.4">
+ − 3 <description> - Procrustes Analysis</description>
+ − 4 <requirements>
+ − 5 <requirement type="package" version="2018.4">qiime2</requirement>
+ − 6 </requirements>
+ − 7 <command><![CDATA[
+ − 8 qiime diversity procrustes-analysis --i-reference=$ireference --i-other=$iother
+ − 9
+ − 10 #if $pdimensions:
+ − 11 --p-dimensions=$pdimensions
+ − 12 #end if
+ − 13
+ − 14 --o-transformed-other=otransformedother --o-transformed-reference=otransformedreference
+ − 15
+ − 16 #if str($cmdconfig) != 'None':
+ − 17 --cmd-config=$cmdconfig
+ − 18 #end if
+ − 19 ;
+ − 20 cp otransformedother.qza $otransformedother;
+ − 21 cp otransformedreference.qza $otransformedreference;
+ − 22 ]]></command>
+ − 23 <inputs>
+ − 24 <param format="qza,no_unzip.zip" label="--i-reference: PCoAResults The ordination matrix to which data is fitted to. [required]" name="ireference" optional="False" type="data"/>
+ − 25 <param format="qza,no_unzip.zip" label="--i-other: PCoAResults The ordination matrix that's fitted to the reference ordination. [required]" name="iother" optional="False" type="data"/>
+ − 26
+ − 27 <param label="--p-dimensions: [default: 5]" name="pdimensions" optional="True" type="integer" value="5"/>
+ − 28
+ − 29 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
+ − 30 </inputs>
+ − 31 <outputs>
+ − 32 <data format="qza" label="${tool.name} on ${on_string}: transformed-other.qza" name="otransformedother"/>
+ − 33 <data format="qza" label="${tool.name} on ${on_string}: transformed-reference.qza" name="otransformedreference"/>
+ − 34 </outputs>
+ − 35 <help><![CDATA[
+ − 36 Procrustes Analysis
+ − 37 --------------------
+ − 38
+ − 39 Fit two ordination matrices with Procrustes analysis
+ − 40
+ − 41 Parameters
+ − 42 ----------
+ − 43 reference : PCoAResults
+ − 44 The ordination matrix to which data is fitted to.
+ − 45 other : PCoAResults
+ − 46 The ordination matrix that's fitted to the reference ordination.
+ − 47 dimensions : Int % Range(1, None), optional
+ − 48 \
+ − 49
+ − 50 Returns
+ − 51 -------
+ − 52 transformed_reference : PCoAResults
+ − 53 A normalized version of the "reference" ordination matrix.
+ − 54 transformed_other : PCoAResults
+ − 55 A normalized and fitted version of the "other" ordination matrix.
+ − 56 ]]>
+ − 57 </help>
+ − 58 </tool>
