<?xml version="1.0" ?>
<tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" version="2018.4">
	<description> - Convert to presence/absence</description>
	<requirements>
		<requirement type="package" version="2018.4">qiime2</requirement>
	</requirements>
	<command>
	<![CDATA[
	qiime feature-table presence-absence --i-table=$itable

	#if str($cmdconfig) != 'None':
	 --cmd-config=$cmdconfig
	#end if
	 --o-presence-absence-table=opresenceabsencetable;

	 cp opresenceabsencetable.qza $opresenceabsencetable;
	]]>
	</command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-table: FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances.  [required]" name="itable" optional="False" type="data"/>
		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: presence-absence-table.qza" name="opresenceabsencetable"/>
	</outputs>
	<help>
		<![CDATA[
Convert to presence/absence
----------------------------

Convert frequencies to binary values indicating presence or absence of a
feature in a sample.

Parameters
----------
table : FeatureTable[Frequency | RelativeFrequency]
    The feature table to be converted into presence/absence abundances.

Returns
-------
presence_absence_table : FeatureTable[PresenceAbsence]
    The resulting presence/absence feature table.
	]]>
	</help>
</tool>