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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-table_merge-taxa" name="qiime feature-table merge-taxa" version="2019.4">
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3 <description> - Combine collections of feature taxonomies</description>
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4 <requirements>
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5 <requirement type="package" version="2019.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime feature-table merge-taxa
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9
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10 #def list_dict_to_string(list_dict):
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11 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
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12 #for d in list_dict[1:]:
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13 #set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
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14 #end for
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15 #return $file_list
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16 #end def
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17 --i-data=$list_dict_to_string($input_files_idata)
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18
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19
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20 --o-merged-data=omergeddata
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21 ;
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22 cp omergeddata.qza $omergeddata
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23 ]]></command>
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24 <inputs>
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25 <repeat name="input_files_idata" optional="False" title="--i-data">
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26 <param format="qza,no_unzip.zip" label="--i-data: PATH List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged. [required]" name="additional_input" type="data"/>
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27 </repeat>
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28 </inputs>
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29 <outputs>
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30 <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata"/>
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31 </outputs>
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32 <help><![CDATA[
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33 Combine collections of feature taxonomies
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34 #########################################
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35
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36 Combines a pair of feature data objects which may or may not contain data
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37 for the same features. If different feature data is present for the same
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38 feature id in the inputs, the data from the first will be propagated to the
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39 result.
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40
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41 Parameters
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42 ----------
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43 data : List[FeatureData[Taxonomy]]
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44 The collection of feature taxonomies to be merged.
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45
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46 Returns
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47 -------
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48 merged_data : FeatureData[Taxonomy]
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49 The resulting collection of feature taxonomies containing all feature
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50 taxonomies provided.
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51 ]]></help>
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52 <macros>
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53 <import>qiime_citation.xml</import>
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54 </macros>
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55 <expand macro="qiime_citation"/>
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56 </tool>
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