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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs" version="2019.4">
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3 <description> - View sequence associated with each feature</description>
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4 <requirements>
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5 <requirement type="package" version="2019.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime feature-table tabulate-seqs
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9
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10 --i-data=$idata
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11
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12 --o-visualization=ovisualization
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13 ;
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14 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'
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15 && cp -r out/* '$ovisualization.files_path'
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16 && mv '$ovisualization.files_path/index.html' '$ovisualization';
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17 ]]></command>
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18 <inputs>
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19 <param format="qza,no_unzip.zip" label="--i-data: ARTIFACT FeatureData[Sequence] The feature sequences to be tabulated. [required]" name="idata" optional="False" type="data"/>
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20 </inputs>
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21 <outputs>
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22 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
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23 </outputs>
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24 <help><![CDATA[
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25 View sequence associated with each feature
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26 ##########################################
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27
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28 Generate tabular view of feature identifier to sequence mapping, including
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29 links to BLAST each sequence against the NCBI nt database.
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30
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31 Parameters
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32 ----------
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33 data : FeatureData[Sequence]
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34 The feature sequences to be tabulated.
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35
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36 Returns
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37 -------
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38 visualization : Visualization
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39 ]]></help>
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40 <macros>
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41 <import>qiime_citation.xml</import>
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42 </macros>
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43 <expand macro="qiime_citation"/>
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44 </tool>
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