Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_feature-table_tabulate-seqs.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_feature-table_tabulate-seqs.xml Wed Jul 17 03:05:17 2019 -0400 @@ -0,0 +1,44 @@ +<?xml version="1.0" ?> +<tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs" version="2019.4"> + <description> - View sequence associated with each feature</description> + <requirements> + <requirement type="package" version="2019.4">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime feature-table tabulate-seqs + +--i-data=$idata + +--o-visualization=ovisualization +; +qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' +&& cp -r out/* '$ovisualization.files_path' +&& mv '$ovisualization.files_path/index.html' '$ovisualization'; + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-data: ARTIFACT FeatureData[Sequence] The feature sequences to be tabulated. [required]" name="idata" optional="False" type="data"/> + </inputs> + <outputs> + <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> + </outputs> + <help><![CDATA[ +View sequence associated with each feature +########################################## + +Generate tabular view of feature identifier to sequence mapping, including +links to BLAST each sequence against the NCBI nt database. + +Parameters +---------- +data : FeatureData[Sequence] + The feature sequences to be tabulated. + +Returns +------- +visualization : Visualization + ]]></help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation"/> +</tool>