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comparison qiime2/qiime_feature-table_tabulate-seqs.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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children f190567fe3f6
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-1:000000000000 0:370e0b6e9826
1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs" version="2019.4">
3 <description> - View sequence associated with each feature</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime feature-table tabulate-seqs
9
10 --i-data=$idata
11
12 --o-visualization=ovisualization
13 ;
14 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'
15 && cp -r out/* '$ovisualization.files_path'
16 && mv '$ovisualization.files_path/index.html' '$ovisualization';
17 ]]></command>
18 <inputs>
19 <param format="qza,no_unzip.zip" label="--i-data: ARTIFACT FeatureData[Sequence] The feature sequences to be tabulated. [required]" name="idata" optional="False" type="data"/>
20 </inputs>
21 <outputs>
22 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
23 </outputs>
24 <help><![CDATA[
25 View sequence associated with each feature
26 ##########################################
27
28 Generate tabular view of feature identifier to sequence mapping, including
29 links to BLAST each sequence against the NCBI nt database.
30
31 Parameters
32 ----------
33 data : FeatureData[Sequence]
34 The feature sequences to be tabulated.
35
36 Returns
37 -------
38 visualization : Visualization
39 ]]></help>
40 <macros>
41 <import>qiime_citation.xml</import>
42 </macros>
43 <expand macro="qiime_citation"/>
44 </tool>