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1 <?xml version="1.0" ?>
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2 <tool id="qiime_diversity-lib_observed-features" name="qiime diversity-lib observed-features"
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3 version="2020.8">
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4 <description>Observed Features</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime diversity-lib observed-features
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10
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11 #if $itable:
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12 --i-table
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13 #end if
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14
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15 --o-vector=ovector
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16
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17 #if str($examples) != 'None':
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18 --examples=$examples
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19 #end if
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20
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21 ;
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22 cp ovector.qza $ovector
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23
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24 ]]></command>
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25 <inputs>
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26 <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency | PresenceAbsence] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence. [required]" name="itable" selected="False" type="boolean" />
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27 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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28
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29 </inputs>
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30
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31 <outputs>
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32 <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" />
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33
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34 </outputs>
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35
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36 <help><![CDATA[
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37 Observed Features
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38 ###############################################################
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39
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40 Compute the number of observed features for each sample in a feature table
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41
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42 Parameters
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43 ----------
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44 table : FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]
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45 The feature table containing the samples for which the number of
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46 observed features should be calculated. Table values will be converted
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47 to presence/absence.
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48
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49 Returns
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50 -------
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51 vector : SampleData[AlphaDiversity]
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52 Vector containing per-sample counts of observed features.
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53 ]]></help>
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54 <macros>
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55 <import>qiime_citation.xml</import>
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56 </macros>
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57 <expand macro="qiime_citation"/>
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58 </tool> |
