Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2-2020.8/qiime_diversity-lib_observed-features.xml @ 20:d93d8888f0b0 draft
Uploaded
author | florianbegusch |
---|---|
date | Fri, 04 Sep 2020 12:44:24 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2-2020.8/qiime_diversity-lib_observed-features.xml Fri Sep 04 12:44:24 2020 +0000 @@ -0,0 +1,58 @@ +<?xml version="1.0" ?> +<tool id="qiime_diversity-lib_observed-features" name="qiime diversity-lib observed-features" + version="2020.8"> + <description>Observed Features</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime diversity-lib observed-features + +#if $itable: + --i-table +#end if + +--o-vector=ovector + +#if str($examples) != 'None': +--examples=$examples +#end if + +; +cp ovector.qza $ovector + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency | PresenceAbsence] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence. [required]" name="itable" selected="False" type="boolean" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" /> + + </outputs> + + <help><![CDATA[ +Observed Features +############################################################### + +Compute the number of observed features for each sample in a feature table + +Parameters +---------- +table : FeatureTable[Frequency | RelativeFrequency | PresenceAbsence] + The feature table containing the samples for which the number of + observed features should be calculated. Table values will be converted + to presence/absence. + +Returns +------- +vector : SampleData[AlphaDiversity] + Vector containing per-sample counts of observed features. + ]]></help> + <macros> + <import>qiime_citation.xml</import> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file