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comparison qiime2-2020.8/qiime_diversity-lib_observed-features.xml @ 20:d93d8888f0b0 draft

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author florianbegusch
date Fri, 04 Sep 2020 12:44:24 +0000
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19:6c48f8d82424 20:d93d8888f0b0
1 <?xml version="1.0" ?>
2 <tool id="qiime_diversity-lib_observed-features" name="qiime diversity-lib observed-features"
3 version="2020.8">
4 <description>Observed Features</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime diversity-lib observed-features
10
11 #if $itable:
12 --i-table
13 #end if
14
15 --o-vector=ovector
16
17 #if str($examples) != 'None':
18 --examples=$examples
19 #end if
20
21 ;
22 cp ovector.qza $ovector
23
24 ]]></command>
25 <inputs>
26 <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency | PresenceAbsence] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence. [required]" name="itable" selected="False" type="boolean" />
27 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
28
29 </inputs>
30
31 <outputs>
32 <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" />
33
34 </outputs>
35
36 <help><![CDATA[
37 Observed Features
38 ###############################################################
39
40 Compute the number of observed features for each sample in a feature table
41
42 Parameters
43 ----------
44 table : FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]
45 The feature table containing the samples for which the number of
46 observed features should be calculated. Table values will be converted
47 to presence/absence.
48
49 Returns
50 -------
51 vector : SampleData[AlphaDiversity]
52 Vector containing per-sample counts of observed features.
53 ]]></help>
54 <macros>
55 <import>qiime_citation.xml</import>
56 </macros>
57 <expand macro="qiime_citation"/>
58 </tool>