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1 <?xml version="1.0" ?>
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2 <tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot"
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3 version="2020.8">
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4 <description>Principal Coordinate Analysis Biplot</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime diversity pcoa-biplot
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10
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11 --i-pcoa=$ipcoa
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12
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13 --i-features=$ifeatures
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14
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15 --o-biplot=obiplot
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16
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17 #if str($examples) != 'None':
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18 --examples=$examples
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19 #end if
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20
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21 ;
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22 cp obiplot.qza $obiplot
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23
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24 ]]></command>
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25 <inputs>
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26 <param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT The PCoA where the features will be projected onto. PCoAResults [required]" name="ipcoa" optional="False" type="data" />
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27 <param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix [required]" name="ifeatures" optional="False" type="data" />
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28 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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29
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30 </inputs>
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31
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32 <outputs>
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33 <data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot" />
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34
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35 </outputs>
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36
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37 <help><![CDATA[
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38 Principal Coordinate Analysis Biplot
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39 ###############################################################
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40
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41 Project features into a principal coordinates matrix. The features used
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42 should be the features used to compute the distance matrix. It is
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43 recommended that these variables be normalized in cases of dimensionally
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44 heterogeneous physical variables.
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45
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46 Parameters
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47 ----------
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48 pcoa : PCoAResults
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49 The PCoA where the features will be projected onto.
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50 features : FeatureTable[RelativeFrequency]
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51 Variables to project onto the PCoA matrix
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52
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53 Returns
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54 -------
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55 biplot : PCoAResults % Properties('biplot')
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56 The resulting PCoA matrix.
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57 ]]></help>
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58 <macros>
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59 <import>qiime_citation.xml</import>
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60 </macros>
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61 <expand macro="qiime_citation"/>
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62 </tool> |
