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comparison qiime2/qiime_feature-table_merge-seqs.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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children 51025741f326
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1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_merge-seqs" name="qiime feature-table merge-seqs" version="2019.4">
3 <description> - Combine collections of feature sequences</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime feature-table merge-seqs
9
10 #def list_dict_to_string(list_dict):
11 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
12 #for d in list_dict[1:]:
13 #set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
14 #end for
15 #return $file_list
16 #end def
17 --i-data=$list_dict_to_string($input_files_idata)
18
19
20 --o-merged-data=omergeddata
21 ;
22 cp omergeddata.qza $omergeddata
23 ]]></command>
24 <inputs>
25 <repeat name="input_files_idata" optional="False" title="--i-data">
26 <param format="qza,no_unzip.zip" label="--i-data: PATH List[FeatureData[Sequence]] The collection of feature sequences to be merged. [required]" name="additional_input" type="data"/>
27 </repeat>
28
29 </inputs>
30 <outputs>
31 <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata"/>
32 </outputs>
33 <help><![CDATA[
34 Combine collections of feature sequences
35 ########################################
36
37 Combines feature data objects which may or may not contain data for the
38 same features. If different feature data is present for the same feature id
39 in the inputs, the data from the first will be propagated to the result.
40
41 Parameters
42 ----------
43 data : List[FeatureData[Sequence]]
44 The collection of feature sequences to be merged.
45
46 Returns
47 -------
48 merged_data : FeatureData[Sequence]
49 The resulting collection of feature sequences containing all feature
50 sequences provided.
51 ]]></help>
52 <macros>
53 <import>qiime_citation.xml</import>
54 </macros>
55 <expand macro="qiime_citation"/>
56 </tool>