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comparison qiime2/qiime_feature-table_subsample.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_subsample" name="qiime feature-table subsample" version="2019.4">
3 <description> - Subsample table</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime feature-table subsample
9
10 --i-table=$itable
11 --p-subsampling-depth="$psubsamplingdepth"
12 --p-axis=$paxis
13
14 --o-sampled-table=osampledtable
15 ;
16 cp osampledtable.qza $osampledtable
17 ]]></command>
18 <inputs>
19 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be sampled. [required]" name="itable" optional="False" type="data"/>
20 <param label="--p-subsampling-depth: INTEGER Range(1, None) The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. [required]" name="psubsamplingdepth" optional="False" min="1" value="" type="integer"/>
21 <param label="--p-axis: " name="paxis" optional="False" type="select">
22 <option value="sample">sample</option>
23 <option value="feature">feature</option>
24 </param>
25 </inputs>
26 <outputs>
27 <data format="qza" label="${tool.name} on ${on_string}: sampledtable.qza" name="osampledtable"/>
28 </outputs>
29 <help><![CDATA[
30 Subsample table
31 ###############
32
33 Randomly pick samples or features, without replacement, from the table.
34
35 Parameters
36 ----------
37 table : FeatureTable[Frequency]
38 The feature table to be sampled.
39 subsampling_depth : Int % Range(1, None)
40 The total number of samples or features to be randomly sampled. Samples
41 or features that are reduced to a zero sum will not be included in the
42 resulting table.
43 axis : Str % Choices('sample', 'feature')
44 The axis to sample over. If "sample" then samples will be randomly
45 selected to be retained. If "feature" then a random set of features
46 will be selected to be retained.
47
48 Returns
49 -------
50 sampled_table : FeatureTable[Frequency]
51 The resulting subsampled feature table.
52 ]]></help>
53 <macros>
54 <import>qiime_citation.xml</import>
55 </macros>
56 <expand macro="qiime_citation"/>
57 </tool>