diff qiime2/qiime_feature-table_subsample.xml @ 0:370e0b6e9826 draft

Uploaded
author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
parents
children de4c22a52df4
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_feature-table_subsample.xml	Wed Jul 17 03:05:17 2019 -0400
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+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_subsample" name="qiime feature-table subsample" version="2019.4">
+	<description> - Subsample table</description>
+	<requirements>
+		<requirement type="package" version="2019.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime feature-table subsample
+
+--i-table=$itable
+--p-subsampling-depth="$psubsamplingdepth"
+--p-axis=$paxis
+
+--o-sampled-table=osampledtable
+;
+cp osampledtable.qza $osampledtable
+	]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be sampled.             [required]" name="itable" optional="False" type="data"/>
+		<param label="--p-subsampling-depth: INTEGER Range(1, None)     The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. [required]" name="psubsamplingdepth" optional="False" min="1" value="" type="integer"/>
+		<param label="--p-axis: " name="paxis" optional="False" type="select">
+			<option value="sample">sample</option>
+			<option value="feature">feature</option>
+		</param>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: sampledtable.qza" name="osampledtable"/>
+	</outputs>
+	<help><![CDATA[
+Subsample table
+###############
+
+Randomly pick samples or features, without replacement, from the table.
+
+Parameters
+----------
+table : FeatureTable[Frequency]
+    The feature table to be sampled.
+subsampling_depth : Int % Range(1, None)
+    The total number of samples or features to be randomly sampled. Samples
+    or features that are reduced to a zero sum will not be included in the
+    resulting table.
+axis : Str % Choices('sample', 'feature')
+    The axis to sample over. If "sample" then samples will be randomly
+    selected to be retained. If "feature" then a random set of features
+    will be selected to be retained.
+
+Returns
+-------
+sampled_table : FeatureTable[Frequency]
+    The resulting subsampled feature table.
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>