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comparison qiime2/qiime_phylogeny_filter-table.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table" version="2019.4">
3 <description> - Remove features from table if they're not present in tree.</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime phylogeny filter-table
9
10 --i-table=$itable
11 --i-tree=$itree
12
13 --o-filtered-table=ofilteredtable
14 ;
15 cp ofilteredtable.qza $ofilteredtable
16 ]]></command>
17 <inputs>
18 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data"/>
19 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table. [required]" name="itree" optional="False" type="data"/>
20 </inputs>
21 <outputs>
22 <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable"/>
23 </outputs>
24 <help><![CDATA[
25 Remove features from table if they're not present in tree.
26 ##########################################################
27
28 Remove features from a feature table if their identifiers are not tip
29 identifiers in tree.
30
31 Parameters
32 ----------
33 table : FeatureTable[Frequency]
34 Feature table that features should be filtered from.
35 tree : Phylogeny[Rooted | Unrooted]
36 Tree where tip identifiers are the feature identifiers that should be
37 retained in the table.
38
39 Returns
40 -------
41 filtered_table : FeatureTable[Frequency]
42 The resulting feature table.
43 ]]></help>
44 <macros>
45 <import>qiime_citation.xml</import>
46 </macros>
47 <expand macro="qiime_citation"/>
48 </tool>