Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_phylogeny_filter-table.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_phylogeny_filter-table.xml Wed Jul 17 03:05:17 2019 -0400 @@ -0,0 +1,48 @@ +<?xml version="1.0" ?> +<tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table" version="2019.4"> + <description> - Remove features from table if they're not present in tree.</description> + <requirements> + <requirement type="package" version="2019.4">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime phylogeny filter-table + +--i-table=$itable +--i-tree=$itree + +--o-filtered-table=ofilteredtable +; +cp ofilteredtable.qza $ofilteredtable + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data"/> + <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table. [required]" name="itree" optional="False" type="data"/> + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable"/> + </outputs> + <help><![CDATA[ +Remove features from table if they're not present in tree. +########################################################## + +Remove features from a feature table if their identifiers are not tip +identifiers in tree. + +Parameters +---------- +table : FeatureTable[Frequency] + Feature table that features should be filtered from. +tree : Phylogeny[Rooted | Unrooted] + Tree where tip identifiers are the feature identifiers that should be + retained in the table. + +Returns +------- +filtered_table : FeatureTable[Frequency] + The resulting feature table. + ]]></help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation"/> +</tool>