diff qiime2/qiime_phylogeny_filter-table.xml @ 0:370e0b6e9826 draft

Uploaded
author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
parents
children f190567fe3f6
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_phylogeny_filter-table.xml	Wed Jul 17 03:05:17 2019 -0400
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+<?xml version="1.0" ?>
+<tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table" version="2019.4">
+	<description> - Remove features from table if they're not present in tree.</description>
+	<requirements>
+		<requirement type="package" version="2019.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime phylogeny filter-table
+
+--i-table=$itable
+--i-tree=$itree
+
+--o-filtered-table=ofilteredtable
+;
+cp ofilteredtable.qza $ofilteredtable
+	]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data"/>
+		<param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table.        [required]" name="itree" optional="False" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable"/>
+	</outputs>
+	<help><![CDATA[
+Remove features from table if they're not present in tree.
+##########################################################
+
+Remove features from a feature table if their identifiers are not tip
+identifiers in tree.
+
+Parameters
+----------
+table : FeatureTable[Frequency]
+    Feature table that features should be filtered from.
+tree : Phylogeny[Rooted | Unrooted]
+    Tree where tip identifiers are the feature identifiers that should be
+    retained in the table.
+
+Returns
+-------
+filtered_table : FeatureTable[Frequency]
+    The resulting feature table.
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>