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comparison qiime2/qiime_demux_subsample-paired.xml @ 29:3ba9833030c1 draft

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author florianbegusch
date Fri, 04 Sep 2020 13:12:49 +0000
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28:c28331a63dfd 29:3ba9833030c1
1 <?xml version="1.0" ?>
2 <tool id="qiime_demux_subsample-paired" name="qiime demux subsample-paired"
3 version="2020.8">
4 <description>Subsample paired-end sequences without replacement.</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime demux subsample-paired
10
11 --i-sequences=$isequences
12
13 --p-fraction=$pfraction
14
15 --o-subsampled-sequences=osubsampledsequences
16
17 #if str($examples) != 'None':
18 --examples=$examples
19 #end if
20
21 ;
22 cp osubsampledsequences.qza $osubsampledsequences
23
24 ]]></command>
25 <inputs>
26 <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT SampleData[PairedEndSequencesWithQuality] The demultiplexed sequences to be subsampled. [required]" name="isequences" optional="False" type="data" />
27 <param label="--p-fraction: PROPORTION Range(0, 1, inclusive_start=False) The fraction of sequences to retain in subsample. [required]" name="pfraction" optional="False" type="text" />
28 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
29
30 </inputs>
31
32 <outputs>
33 <data format="qza" label="${tool.name} on ${on_string}: subsampledsequences.qza" name="osubsampledsequences" />
34
35 </outputs>
36
37 <help><![CDATA[
38 Subsample paired-end sequences without replacement.
39 ###############################################################
40
41 Generate a random subsample of paired-end sequences containing
42 approximately the fraction of input sequences specified by the fraction
43 parameter. The number of output samples will always be equal to the number
44 of input samples, even if some of those samples contain no sequences after
45 subsampling.
46
47 Parameters
48 ----------
49 sequences : SampleData[PairedEndSequencesWithQuality]
50 The demultiplexed sequences to be subsampled.
51 fraction : Float % Range(0, 1, inclusive_start=False)
52 The fraction of sequences to retain in subsample.
53
54 Returns
55 -------
56 subsampled_sequences : SampleData[PairedEndSequencesWithQuality]
57 The subsampled sequences.
58 ]]></help>
59 <macros>
60 <import>qiime_citation.xml</import>
61 </macros>
62 <expand macro="qiime_citation"/>
63 </tool>