Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_deblur_visualize-stats.xml @ 14:a0a8d77a991c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author florianbegusch
date Thu, 03 Sep 2020 09:51:29 +0000
parents f190567fe3f6
children
comparison
equal deleted inserted replaced
13:887cd4ad8e16 14:a0a8d77a991c
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2019.7"> 2 <tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats"
3 <description> - Visualize Deblur stats per sample.</description> 3 version="2020.8">
4 <requirements> 4 <description>Visualize Deblur stats per sample.</description>
5 <requirement type="package" version="2019.7">qiime2</requirement> 5 <requirements>
6 </requirements> 6 <requirement type="package" version="2020.8">qiime2</requirement>
7 <command><![CDATA[ 7 </requirements>
8 <command><![CDATA[
8 qiime deblur visualize-stats 9 qiime deblur visualize-stats
9 10
10 --i-deblur-stats=$ideblurstats 11 --i-deblur-stats=$ideblurstats
11 12
12 --o-visualization=ovisualization 13 --o-visualization=ovisualization
14
15 #if str($examples) != 'None':
16 --examples=$examples
17 #end if
18
13 ; 19 ;
14 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' 20 cp ostats.qza $ostats
21
22 ;
23 qiime tools export ovisualization.qzv --output-path out
24 && mkdir -p '$ovisualization.files_path'
15 && cp -r out/* '$ovisualization.files_path' 25 && cp -r out/* '$ovisualization.files_path'
16 && mv '$ovisualization.files_path/index.html' '$ovisualization'; 26 && mv '$ovisualization.files_path/index.html' '$ovisualization'
17 ]]></command> 27
18 <inputs> 28 ]]></command>
19 <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data"/> 29 <inputs>
20 </inputs> 30 <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data" />
21 <outputs> 31 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
22 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> 32
23 </outputs> 33 </inputs>
24 <help><![CDATA[ 34
35 <outputs>
36 <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
37
38 </outputs>
39
40 <help><![CDATA[
25 Visualize Deblur stats per sample. 41 Visualize Deblur stats per sample.
26 ################################## 42 ###############################################################
27 43
28 Display Deblur statistics per sample 44 Display Deblur statistics per sample
29 45
30 Parameters 46 Parameters
31 ---------- 47 ----------
33 Summary statistics of the Deblur process. 49 Summary statistics of the Deblur process.
34 50
35 Returns 51 Returns
36 ------- 52 -------
37 visualization : Visualization 53 visualization : Visualization
38 ]]></help> 54 ]]></help>
39 <macros> 55 <macros>
40 <import>qiime_citation.xml</import> 56 <import>qiime_citation.xml</import>
41 </macros> 57 </macros>
42 <expand macro="qiime_citation"/> 58 <expand macro="qiime_citation"/>
43 </tool> 59 </tool>