Mercurial > repos > florianbegusch > qiime2_suite
view qiime2/qiime_deblur_visualize-stats.xml @ 14:a0a8d77a991c draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:51:29 +0000 |
parents | f190567fe3f6 |
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<?xml version="1.0" ?> <tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2020.8"> <description>Visualize Deblur stats per sample.</description> <requirements> <requirement type="package" version="2020.8">qiime2</requirement> </requirements> <command><![CDATA[ qiime deblur visualize-stats --i-deblur-stats=$ideblurstats --o-visualization=ovisualization #if str($examples) != 'None': --examples=$examples #end if ; cp ostats.qza $ostats ; qiime tools export ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' && cp -r out/* '$ovisualization.files_path' && mv '$ovisualization.files_path/index.html' '$ovisualization' ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data" /> <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> </inputs> <outputs> <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" /> </outputs> <help><![CDATA[ Visualize Deblur stats per sample. ############################################################### Display Deblur statistics per sample Parameters ---------- deblur_stats : DeblurStats Summary statistics of the Deblur process. Returns ------- visualization : Visualization ]]></help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation"/> </tool>