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comparison qiime2-2020.8/qiime_deblur_visualize-stats.xml @ 20:d93d8888f0b0 draft

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author florianbegusch
date Fri, 04 Sep 2020 12:44:24 +0000
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19:6c48f8d82424 20:d93d8888f0b0
1 <?xml version="1.0" ?>
2 <tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats"
3 version="2020.8">
4 <description>Visualize Deblur stats per sample.</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime deblur visualize-stats
10
11 --i-deblur-stats=$ideblurstats
12
13 --o-visualization=ovisualization
14
15 #if str($examples) != 'None':
16 --examples=$examples
17 #end if
18
19 ;
20 cp ostats.qza $ostats
21
22 ;
23 qiime tools export ovisualization.qzv --output-path out
24 && mkdir -p '$ovisualization.files_path'
25 && cp -r out/* '$ovisualization.files_path'
26 && mv '$ovisualization.files_path/index.html' '$ovisualization'
27
28 ]]></command>
29 <inputs>
30 <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data" />
31 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
32
33 </inputs>
34
35 <outputs>
36 <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
37
38 </outputs>
39
40 <help><![CDATA[
41 Visualize Deblur stats per sample.
42 ###############################################################
43
44 Display Deblur statistics per sample
45
46 Parameters
47 ----------
48 deblur_stats : DeblurStats
49 Summary statistics of the Deblur process.
50
51 Returns
52 -------
53 visualization : Visualization
54 ]]></help>
55 <macros>
56 <import>qiime_citation.xml</import>
57 </macros>
58 <expand macro="qiime_citation"/>
59 </tool>