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comparison qiime2-2020.8/qiime_feature-table_presence-absence.xml @ 20:d93d8888f0b0 draft

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author florianbegusch
date Fri, 04 Sep 2020 12:44:24 +0000
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19:6c48f8d82424 20:d93d8888f0b0
1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence"
3 version="2020.8">
4 <description>Convert to presence/absence</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime feature-table presence-absence
10
11 #if $itable:
12 --i-table
13 #end if
14
15 #if $opresenceabsencetable:
16 --o-presence-absence-table
17 #end if
18
19 #if str($examples) != 'None':
20 --examples=$examples
21 #end if
22
23 ;
24 cp omergeddata.qza $omergeddata
25
26 ]]></command>
27 <inputs>
28 <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. [required]" name="itable" selected="False" type="boolean" />
29 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
30
31 </inputs>
32
33 <outputs>
34 <param label="--o-presence-absence-table: --o-presence-absence-table: ARTIFACT FeatureTable[PresenceAbsence] The resulting presence/absence feature table. [required]" name="opresenceabsencetable" selected="False" type="boolean" />
35
36 </outputs>
37
38 <help><![CDATA[
39 Convert to presence/absence
40 ###############################################################
41
42 Convert frequencies to binary values indicating presence or absence of a
43 feature in a sample.
44
45 Parameters
46 ----------
47 table : FeatureTable[Frequency | RelativeFrequency]
48 The feature table to be converted into presence/absence abundances.
49
50 Returns
51 -------
52 presence_absence_table : FeatureTable[PresenceAbsence]
53 The resulting presence/absence feature table.
54 ]]></help>
55 <macros>
56 <import>qiime_citation.xml</import>
57 </macros>
58 <expand macro="qiime_citation"/>
59 </tool>