diff qiime2-2020.8/qiime_feature-table_presence-absence.xml @ 20:d93d8888f0b0 draft

Uploaded
author florianbegusch
date Fri, 04 Sep 2020 12:44:24 +0000
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+++ b/qiime2-2020.8/qiime_feature-table_presence-absence.xml	Fri Sep 04 12:44:24 2020 +0000
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+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence"
+      version="2020.8">
+  <description>Convert to presence/absence</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime feature-table presence-absence
+
+#if $itable:
+ --i-table
+#end if
+
+#if $opresenceabsencetable:
+ --o-presence-absence-table
+#end if
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp omergeddata.qza $omergeddata
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances.                 [required]" name="itable" selected="False" type="boolean" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <param label="--o-presence-absence-table: --o-presence-absence-table: ARTIFACT FeatureTable[PresenceAbsence] The resulting presence/absence feature table. [required]" name="opresenceabsencetable" selected="False" type="boolean" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Convert to presence/absence
+###############################################################
+
+Convert frequencies to binary values indicating presence or absence of a
+feature in a sample.
+
+Parameters
+----------
+table : FeatureTable[Frequency | RelativeFrequency]
+    The feature table to be converted into presence/absence abundances.
+
+Returns
+-------
+presence_absence_table : FeatureTable[PresenceAbsence]
+    The resulting presence/absence feature table.
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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