Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2-2020.8/qiime_feature-table_presence-absence.xml @ 20:d93d8888f0b0 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 12:44:24 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2-2020.8/qiime_feature-table_presence-absence.xml Fri Sep 04 12:44:24 2020 +0000 @@ -0,0 +1,59 @@ +<?xml version="1.0" ?> +<tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" + version="2020.8"> + <description>Convert to presence/absence</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime feature-table presence-absence + +#if $itable: + --i-table +#end if + +#if $opresenceabsencetable: + --o-presence-absence-table +#end if + +#if str($examples) != 'None': +--examples=$examples +#end if + +; +cp omergeddata.qza $omergeddata + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. [required]" name="itable" selected="False" type="boolean" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <param label="--o-presence-absence-table: --o-presence-absence-table: ARTIFACT FeatureTable[PresenceAbsence] The resulting presence/absence feature table. [required]" name="opresenceabsencetable" selected="False" type="boolean" /> + + </outputs> + + <help><![CDATA[ +Convert to presence/absence +############################################################### + +Convert frequencies to binary values indicating presence or absence of a +feature in a sample. + +Parameters +---------- +table : FeatureTable[Frequency | RelativeFrequency] + The feature table to be converted into presence/absence abundances. + +Returns +------- +presence_absence_table : FeatureTable[PresenceAbsence] + The resulting presence/absence feature table. + ]]></help> + <macros> + <import>qiime_citation.xml</import> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file