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comparison qiime2/qiime_diversity_beta-group-significance.xml @ 6:de4c22a52df4 draft

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:46:48 -0400
parents 914fa4daf16a
children f190567fe3f6
comparison
equal deleted inserted replaced
5:a025a4a89e07 6:de4c22a52df4
10 --i-distance-matrix=$idistancematrix 10 --i-distance-matrix=$idistancematrix
11 --m-metadata-column="$mmetadatacolumn" 11 --m-metadata-column="$mmetadatacolumn"
12 12
13 13
14 14
15 #if $input_files_mmetadatafile: 15 #if $metadatafile:
16 #def list_dict_to_string(list_dict): 16 --m-metadata-file=$metadatafile
17 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
18 #for d in list_dict[1:]:
19 #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
20 #end for
21 #return $file_list
22 #end def
23 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
24 #end if 17 #end if
25
26 18
27 19
28 #if str($pmethod) != 'None': 20 #if str($pmethod) != 'None':
29 --p-method=$pmethod 21 --p-method=$pmethod
30 #end if 22 #end if
31 23
32 #if $ppairwise: 24 #if $ppairwise:
33 --p-pairwise 25 --p-pairwise
34 #end if 26 #end if
35 27
36 #if $ppermutations: 28 #if str($ppermutations):
37 --p-permutations=$ppermutations 29 --p-permutations=$ppermutations
38 #end if 30 #end if
39 31
40 --o-visualization=ovisualization 32 --o-visualization=ovisualization
41 ; 33 ;
53 <option value="permdisp">permdisp</option> 45 <option value="permdisp">permdisp</option>
54 </param> 46 </param>
55 <param label="--p-pairwise: --p-no-pairwise Perform pairwise tests between all pairs of groups in addition to the test across all groups. This can be very slow if there are a lot of groups in the metadata column. [default: False]" name="ppairwise" selected="False" type="boolean"/> 47 <param label="--p-pairwise: --p-no-pairwise Perform pairwise tests between all pairs of groups in addition to the test across all groups. This can be very slow if there are a lot of groups in the metadata column. [default: False]" name="ppairwise" selected="False" type="boolean"/>
56 <param label="--p-permutations: INTEGER The number of permutations to be run when computing p-values. [default: 999]" name="ppermutations" optional="True" type="integer" value="999"/> 48 <param label="--p-permutations: INTEGER The number of permutations to be run when computing p-values. [default: 999]" name="ppermutations" optional="True" type="integer" value="999"/>
57 49
58 <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file [required]"> 50 <param label="--m-metadata-file METADATA [required]" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" optional="False" />
59 <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
60 </repeat>
61 </inputs> 51 </inputs>
62 <outputs> 52 <outputs>
63 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> 53 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
64 </outputs> 54 </outputs>
65 <help><![CDATA[ 55 <help><![CDATA[