Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_diversity_beta-group-significance.xml @ 6:de4c22a52df4 draft
Fixes
author | florianbegusch |
---|---|
date | Tue, 13 Aug 2019 07:46:48 -0400 |
parents | 914fa4daf16a |
children | f190567fe3f6 |
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--- a/qiime2/qiime_diversity_beta-group-significance.xml Mon Aug 05 01:29:30 2019 -0400 +++ b/qiime2/qiime_diversity_beta-group-significance.xml Tue Aug 13 07:46:48 2019 -0400 @@ -12,19 +12,11 @@ -#if $input_files_mmetadatafile: -#def list_dict_to_string(list_dict): - #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') - #for d in list_dict[1:]: - #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name') - #end for - #return $file_list -#end def - --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) +#if $metadatafile: + --m-metadata-file=$metadatafile #end if - #if str($pmethod) != 'None': --p-method=$pmethod #end if @@ -33,7 +25,7 @@ --p-pairwise #end if -#if $ppermutations: +#if str($ppermutations): --p-permutations=$ppermutations #end if @@ -55,9 +47,7 @@ <param label="--p-pairwise: --p-no-pairwise Perform pairwise tests between all pairs of groups in addition to the test across all groups. This can be very slow if there are a lot of groups in the metadata column. [default: False]" name="ppairwise" selected="False" type="boolean"/> <param label="--p-permutations: INTEGER The number of permutations to be run when computing p-values. [default: 999]" name="ppermutations" optional="True" type="integer" value="999"/> - <repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file [required]"> - <param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" /> - </repeat> + <param label="--m-metadata-file METADATA [required]" name="metadatafile" type="data" format="tabular,qza,no_unzip.zip" optional="False" /> </inputs> <outputs> <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>