Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_demux_subsample-single.xml @ 14:a0a8d77a991c draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:51:29 +0000 |
parents | f190567fe3f6 |
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--- a/qiime2/qiime_demux_subsample-single.xml Thu Sep 03 09:46:00 2020 +0000 +++ b/qiime2/qiime_demux_subsample-single.xml Thu Sep 03 09:51:29 2020 +0000 @@ -1,29 +1,42 @@ <?xml version="1.0" ?> -<tool id="qiime_demux_subsample-single" name="qiime demux subsample-single" version="2019.7"> - <description> - Subsample single-end sequences without replacement.</description> - <requirements> - <requirement type="package" version="2019.7">qiime2</requirement> - </requirements> - <command><![CDATA[ +<tool id="qiime_demux_subsample-single" name="qiime demux subsample-single" + version="2020.8"> + <description>Subsample single-end sequences without replacement.</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ qiime demux subsample-single --i-sequences=$isequences ---p-fraction="$pfraction" + +--p-fraction=$pfraction --o-subsampled-sequences=osubsampledsequences + +#if str($examples) != 'None': +--examples=$examples +#end if + ; cp osubsampledsequences.qza $osubsampledsequences - ]]></command> - <inputs> - <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT SampleData[SequencesWithQuality | PairedEndSequencesWithQuality] The demultiplexed sequences to be subsampled. [required]" name="isequences" optional="False" type="data"/> - <param label="--p-fraction: PROPORTION Range(0, 1, inclusive_start=False) The fraction of sequences to retain in subsample. [required]" name="pfraction" optional="False" exclude_min="True" min="0" max="1" value="" type="float"/> - </inputs> - <outputs> - <data format="qza" label="${tool.name} on ${on_string}: subsampledsequences.qza" name="osubsampledsequences"/> - </outputs> - <help><![CDATA[ + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT SampleData[SequencesWithQuality | PairedEndSequencesWithQuality] The demultiplexed sequences to be subsampled. [required]" name="isequences" optional="False" type="data" /> + <param label="--p-fraction: PROPORTION Range(0, 1, inclusive_start=False) The fraction of sequences to retain in subsample. [required]" name="pfraction" optional="False" type="text" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: subsampledsequences.qza" name="osubsampledsequences" /> + + </outputs> + + <help><![CDATA[ Subsample single-end sequences without replacement. -################################################### +############################################################### Generate a random subsample of single-end sequences containing approximately the fraction of input sequences specified by the fraction @@ -42,9 +55,9 @@ ------- subsampled_sequences : SampleData[SequencesWithQuality] The subsampled sequences. - ]]></help> -<macros> + ]]></help> + <macros> <import>qiime_citation.xml</import> -</macros> -<expand macro="qiime_citation"/> -</tool> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file