Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2-2020.8/qiime_deblur_visualize-stats.xml @ 20:d93d8888f0b0 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 12:44:24 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2-2020.8/qiime_deblur_visualize-stats.xml Fri Sep 04 12:44:24 2020 +0000 @@ -0,0 +1,59 @@ +<?xml version="1.0" ?> +<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" + version="2020.8"> + <description>Visualize Deblur stats per sample.</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime deblur visualize-stats + +--i-deblur-stats=$ideblurstats + +--o-visualization=ovisualization + +#if str($examples) != 'None': +--examples=$examples +#end if + +; +cp ostats.qza $ostats + +; +qiime tools export ovisualization.qzv --output-path out +&& mkdir -p '$ovisualization.files_path' +&& cp -r out/* '$ovisualization.files_path' +&& mv '$ovisualization.files_path/index.html' '$ovisualization' + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" /> + + </outputs> + + <help><![CDATA[ +Visualize Deblur stats per sample. +############################################################### + +Display Deblur statistics per sample + +Parameters +---------- +deblur_stats : DeblurStats + Summary statistics of the Deblur process. + +Returns +------- +visualization : Visualization + ]]></help> + <macros> + <import>qiime_citation.xml</import> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file