Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2-2020.8/qiime_diversity_procrustes-analysis.xml @ 20:d93d8888f0b0 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 12:44:24 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2-2020.8/qiime_diversity_procrustes-analysis.xml Fri Sep 04 12:44:24 2020 +0000 @@ -0,0 +1,68 @@ +<?xml version="1.0" ?> +<tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis" + version="2020.8"> + <description>Procrustes Analysis</description> + <requirements> + <requirement type="package" version="2020.8">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime diversity procrustes-analysis + +--i-reference=$ireference + +--i-other=$iother + +--p-dimensions=$pdimensions + +--o-transformed-reference=otransformedreference + +--o-transformed-other=otransformedother + +#if str($examples) != 'None': +--examples=$examples +#end if + +; +cp otransformedother.qza $otransformedother + + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT The ordination matrix to which data is fitted to. PCoAResults [required]" name="ireference" optional="False" type="data" /> + <param format="qza,no_unzip.zip" label="--i-other: ARTIFACT The ordination matrix that\'s fitted to the PCoAResults reference ordination. [required]" name="iother" optional="False" type="data" /> + <param label="--p-dimensions: INTEGER Range(1, None) [default: 5]" min="1" name="pdimensions" optional="True" type="integer" value="5" /> + <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> + + </inputs> + + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference" /> + <data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother" /> + + </outputs> + + <help><![CDATA[ +Procrustes Analysis +############################################################### + +Fit two ordination matrices with Procrustes analysis + +Parameters +---------- +reference : PCoAResults + The ordination matrix to which data is fitted to. +other : PCoAResults + The ordination matrix that's fitted to the reference ordination. +dimensions : Int % Range(1, None), optional + +Returns +------- +transformed_reference : PCoAResults + A normalized version of the "reference" ordination matrix. +transformed_other : PCoAResults + A normalized and fitted version of the "other" ordination matrix. + ]]></help> + <macros> + <import>qiime_citation.xml</import> + </macros> + <expand macro="qiime_citation"/> +</tool> \ No newline at end of file