<?xml version="1.0" ?>
<tool id="qiime_diversity_procrustes-analysis" name="qiime diversity procrustes-analysis"
      version="2020.8">
  <description>Procrustes Analysis</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime diversity procrustes-analysis

--i-reference=$ireference

--i-other=$iother

--p-dimensions=$pdimensions

--o-transformed-reference=otransformedreference

--o-transformed-other=otransformedother

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp otransformedother.qza $otransformedother

  ]]></command>
  <inputs>
    <param format="qza,no_unzip.zip" label="--i-reference: ARTIFACT  The ordination matrix to which data is fitted to. PCoAResults                                                     [required]" name="ireference" optional="False" type="data" />
    <param format="qza,no_unzip.zip" label="--i-other: ARTIFACT      The ordination matrix that\'s fitted to the PCoAResults           reference ordination.                     [required]" name="iother" optional="False" type="data" />
    <param label="--p-dimensions: INTEGER Range(1, None)                                                [default: 5]" min="1" name="pdimensions" optional="True" type="integer" value="5" />
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <data format="qza" label="${tool.name} on ${on_string}: transformedreference.qza" name="otransformedreference" />
    <data format="qza" label="${tool.name} on ${on_string}: transformedother.qza" name="otransformedother" />
    
  </outputs>

  <help><![CDATA[
Procrustes Analysis
###############################################################

Fit two ordination matrices with Procrustes analysis

Parameters
----------
reference : PCoAResults
    The ordination matrix to which data is fitted to.
other : PCoAResults
    The ordination matrix that's fitted to the reference ordination.
dimensions : Int % Range(1, None), optional

Returns
-------
transformed_reference : PCoAResults
    A normalized version of the "reference" ordination matrix.
transformed_other : PCoAResults
    A normalized and fitted version of the "other" ordination matrix.
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>