Mercurial > repos > florianbegusch > qiime2_suite

changeset 1:255f48db74f8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Hotfix
author florianbegusch
date Wed, 17 Jul 2019 03:26:16 -0400
parents 370e0b6e9826
children 51025741f326
files qiime2/.idea/workspace.xml qiime2/qiime_citation.xml qiime2/qiime_sample-classifier_maturity-index.xml
diffstat 3 files changed, 519 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/.idea/workspace.xml	Wed Jul 17 03:26:16 2019 -0400
@@ -0,0 +1,517 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ChangeListManager">
+    <list default="true" id="b6f0e792-e8ea-43a1-9747-395b6f53af7f" name="Default Changelist" comment="" />
+    <option name="EXCLUDED_CONVERTED_TO_IGNORED" value="true" />
+    <option name="SHOW_DIALOG" value="false" />
+    <option name="HIGHLIGHT_CONFLICTS" value="true" />
+    <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
+    <option name="LAST_RESOLUTION" value="IGNORE" />
+  </component>
+  <component name="FileEditorManager">
+    <leaf SIDE_TABS_SIZE_LIMIT_KEY="300">
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_sample-classifier_maturity-index.xml">
+          <provider selected="true" editor-type-id="text-editor" />
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_feature-classifier_classify-sklearn.xml">
+          <provider selected="true" editor-type-id="text-editor" />
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_feature-classifier_extract-reads.xml">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="735">
+              <caret line="49" column="14" selection-start-line="49" selection-start-column="14" selection-end-line="49" selection-end-column="14" />
+            </state>
+          </provider>
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="true">
+        <entry file="file://$PROJECT_DIR$/qiime_composition_ancom.xml">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="705">
+              <caret line="47" column="65" selection-start-line="47" selection-start-column="65" selection-end-line="47" selection-end-column="65" />
+            </state>
+          </provider>
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_feature-table_merge.xml">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="435">
+              <caret line="29" selection-start-line="29" selection-end-line="29" />
+            </state>
+          </provider>
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_feature-table_merge-seqs.xml">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="360">
+              <caret line="24" selection-start-line="24" selection-end-line="24" />
+            </state>
+          </provider>
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_feature-table_merge-taxa.xml">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="360">
+              <caret line="24" selection-start-line="24" selection-end-line="24" />
+            </state>
+          </provider>
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_vsearch_uchime-denovo.xml">
+          <provider selected="true" editor-type-id="text-editor" />
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_vsearch_uchime-ref.xml">
+          <provider selected="true" editor-type-id="text-editor" />
+        </entry>
+      </file>
+      <file pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/qiime_tools_import.xml">
+          <provider selected="true" editor-type-id="text-editor" />
+        </entry>
+      </file>
+    </leaf>
+  </component>
+  <component name="FindInProjectRecents">
+    <findStrings>
+      <find>anywhere-r</find>
+    </findStrings>
+  </component>
+  <component name="Git.Settings">
+    <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$/.." />
+  </component>
+  <component name="IdeDocumentHistory">
+    <option name="CHANGED_PATHS">
+      <list>
+        <option value="$PROJECT_DIR$/qiime_diversity_beta-phylogenetic.xml" />
+        <option value="$PROJECT_DIR$/qiime_feature-classifier_extract-reads.xml" />
+      </list>
+    </option>
+  </component>
+  <component name="ProjectFrameBounds" extendedState="4">
+    <option name="y" value="26" />
+    <option name="width" value="960" />
+    <option name="height" value="1054" />
+  </component>
+  <component name="ProjectLevelVcsManager" settingsEditedManually="true" />
+  <component name="ProjectView">
+    <navigator proportions="" version="1">
+      <foldersAlwaysOnTop value="true" />
+    </navigator>
+    <panes>
+      <pane id="ProjectPane">
+        <subPane>
+          <expand>
+            <path>
+              <item name="qiime2" type="b2602c69:ProjectViewProjectNode" />
+              <item name="qiime2" type="462c0819:PsiDirectoryNode" />
+            </path>
+          </expand>
+          <select />
+        </subPane>
+      </pane>
+      <pane id="Scope" />
+      <pane id="PackagesPane" />
+    </panes>
+  </component>
+  <component name="PropertiesComponent">
+    <property name="last_opened_file_path" value="$PROJECT_DIR$" />
+    <property name="project.structure.last.edited" value="Problems" />
+    <property name="project.structure.proportion" value="0.15" />
+    <property name="project.structure.side.proportion" value="0.2" />
+    <property name="settings.editor.selected.configurable" value="reference.settingsdialog.IDE.editor.colors.XML" />
+  </component>
+  <component name="RunDashboard">
+    <option name="ruleStates">
+      <list>
+        <RuleState>
+          <option name="name" value="ConfigurationTypeDashboardGroupingRule" />
+        </RuleState>
+        <RuleState>
+          <option name="name" value="StatusDashboardGroupingRule" />
+        </RuleState>
+      </list>
+    </option>
+  </component>
+  <component name="RunManager">
+    <configuration default="true" type="Applet">
+      <option name="POLICY_FILE" value="$APPLICATION_HOME_DIR$/bin/appletviewer.policy" />
+      <method v="2">
+        <option name="Make" enabled="true" />
+      </method>
+    </configuration>
+    <configuration default="true" type="Application" factoryName="Application">
+      <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+      <method v="2">
+        <option name="Make" enabled="true" />
+      </method>
+    </configuration>
+    <configuration default="true" type="JUnit" factoryName="JUnit">
+      <option name="TEST_OBJECT" value="class" />
+      <option name="WORKING_DIRECTORY" value="$MODULE_DIR$" />
+      <method v="2">
+        <option name="Make" enabled="true" />
+      </method>
+    </configuration>
+    <configuration default="true" type="TestNG">
+      <option name="TEST_OBJECT" value="CLASS" />
+      <option name="WORKING_DIRECTORY" value="$MODULE_DIR$" />
+      <properties />
+      <listeners />
+      <method v="2">
+        <option name="Make" enabled="true" />
+      </method>
+    </configuration>
+    <configuration default="true" type="#org.jetbrains.idea.devkit.run.PluginConfigurationType">
+      <module name="" />
+      <option name="VM_PARAMETERS" value="-Xmx512m -Xms256m -XX:MaxPermSize=250m -ea" />
+      <option name="PROGRAM_PARAMETERS" />
+      <predefined_log_file enabled="true" id="idea.log" />
+      <method v="2">
+        <option name="Make" enabled="true" />
+      </method>
+    </configuration>
+  </component>
+  <component name="SvnConfiguration">
+    <configuration />
+  </component>
+  <component name="TaskManager">
+    <task active="true" id="Default" summary="Default task">
+      <changelist id="b6f0e792-e8ea-43a1-9747-395b6f53af7f" name="Default Changelist" comment="" />
+      <created>1562958108875</created>
+      <option name="number" value="Default" />
+      <option name="presentableId" value="Default" />
+      <updated>1562958108875</updated>
+    </task>
+    <servers />
+  </component>
+  <component name="ToolWindowManager">
+    <frame x="0" y="26" width="960" height="1054" extended-state="4" />
+    <layout>
+      <window_info active="true" content_ui="combo" id="Project" order="0" sideWeight="0.43736503" visible="true" weight="0.24836601" />
+      <window_info id="Structure" order="1" sideWeight="0.562635" side_tool="true" visible="true" weight="0.24836601" />
+      <window_info id="Nl-Palette" order="2" />
+      <window_info id="Capture Tool" order="3" />
+      <window_info id="Designer" order="4" />
+      <window_info id="UI Designer" order="5" />
+      <window_info id="Image Layers" order="6" />
+      <window_info id="Captures" order="7" sideWeight="0.45717037" weight="0.32995737" />
+      <window_info id="Favorites" order="8" sideWeight="0.54282963" side_tool="true" weight="0.32995737" />
+      <window_info id="Build Variants" order="9" sideWeight="0.54282963" side_tool="true" weight="0.32995737" />
+      <window_info anchor="bottom" id="Message" order="0" />
+      <window_info anchor="bottom" id="Find" order="1" sideWeight="0.49573562" weight="0.3282002" />
+      <window_info anchor="bottom" id="Run" order="2" sideWeight="0.4953125" weight="0.29162657" />
+      <window_info anchor="bottom" id="Debug" order="3" sideWeight="0.49479166" weight="0.39942253" />
+      <window_info anchor="bottom" id="Cvs" order="4" weight="0.25" />
+      <window_info anchor="bottom" id="Inspection" order="5" weight="0.4" />
+      <window_info anchor="bottom" id="TODO" order="6" weight="0.32916266" />
+      <window_info anchor="bottom" id="Event Log" order="7" sideWeight="0.5042644" side_tool="true" weight="0.3282002" />
+      <window_info anchor="bottom" id="Messages" order="8" sideWeight="0.49791667" weight="0.32627526" />
+      <window_info anchor="bottom" id="Version Control" order="9" weight="0.3282002" />
+      <window_info anchor="bottom" id="Terminal" order="10" weight="0.3282002" />
+      <window_info anchor="bottom" id="Android Monitor" order="11" weight="0.3298077" />
+      <window_info anchor="right" id="Commander" order="0" weight="0.4" />
+      <window_info anchor="right" id="Ant Build" order="1" weight="0.25" />
+      <window_info anchor="right" content_ui="combo" id="Hierarchy" order="2" weight="0.25" />
+      <window_info anchor="right" id="Palette" order="3" />
+      <window_info anchor="right" id="Properties" order="4" />
+      <window_info anchor="right" id="Android Model" order="5" side_tool="true" />
+      <window_info anchor="right" id="Palette&#9;" order="6" />
+      <window_info anchor="right" id="Capture Analysis" order="7" />
+      <window_info anchor="right" id="Gradle" order="8" />
+      <window_info anchor="right" id="Theme Preview" order="9" />
+      <window_info anchor="right" id="Maven Projects" order="10" />
+      <window_info anchor="right" id="Preview" order="11" />
+      <window_info anchor="right" id="Maven" order="12" />
+    </layout>
+  </component>
+  <component name="editorHistoryManager">
+    <entry file="file://$PROJECT_DIR$/qiime_feature-table_summarize.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-233" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_gneiss_add-pseudocount.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_feature-table_tabulate-seqs.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_gneiss_assign-ids.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="585">
+          <caret line="42" column="39" selection-start-line="42" selection-start-column="39" selection-end-line="42" selection-end-column="39" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_gneiss_balance-taxonomy.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-1193" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_gneiss_correlation-clustering.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-38" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_gneiss_dendrogram-heatmap.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-225" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_gneiss_gradient-clustering.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-45" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_gneiss_lme-regression.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-405" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_gneiss_ols-regression.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_longitudinal_first-differences.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_longitudinal_first-distances.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_longitudinal_linear-mixed-effects.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_longitudinal_nmit.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="240">
+          <caret line="16" column="12" lean-forward="true" selection-start-line="16" selection-start-column="12" selection-end-line="16" selection-end-column="12" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_longitudinal_pairwise-differences.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-360" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_longitudinal_pairwise-distances.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_longitudinal_volatility.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_metadata_distance-matrix.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-173" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_metadata_tabulate.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="225">
+          <caret line="18" column="5" lean-forward="true" selection-start-line="18" selection-start-column="5" selection-end-line="18" selection-end-column="65" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_phylogeny_fasttree.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_phylogeny_filter-table.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-23" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_phylogeny_midpoint-root.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_quality-control_evaluate-composition.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_quality-control_evaluate-seqs.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-368" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_quality-control_exclude-seqs.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_quality-filter_q-score.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-53" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_quality-filter_q-score-joined.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_sample-classifier_classify-samples.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_sample-classifier_regress-samples.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-1133">
+          <caret line="52" column="11" lean-forward="true" selection-start-line="52" selection-start-column="11" selection-end-line="52" selection-end-column="11" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_taxa_barplot.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_taxa_collapse.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_taxa_filter-seqs.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="105">
+          <caret line="10" selection-start-line="10" selection-end-line="16" selection-end-column="11" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_tools_export.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_tools_export_collection.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_tools_export_paired_collection.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_vsearch_cluster-features-de-novo.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-398" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_vsearch_cluster-features-open-reference.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-90" />
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_vsearch_cluster-features-closed-reference.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="690">
+          <caret line="46" column="13" selection-start-line="46" selection-start-column="13" selection-end-line="46" selection-end-column="13" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_vsearch_dereplicate-sequences.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_vsearch_join-pairs.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="1665">
+          <caret line="111" selection-start-line="111" selection-end-line="111" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_taxa_filter-table.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_sample-classifier_maturity-index.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_feature-classifier_classify-sklearn.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_vsearch_uchime-denovo.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_vsearch_uchime-ref.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_tools_import.xml">
+      <provider selected="true" editor-type-id="text-editor" />
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_feature-classifier_extract-reads.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="735">
+          <caret line="49" column="14" selection-start-line="49" selection-start-column="14" selection-end-line="49" selection-end-column="14" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_feature-table_merge.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="435">
+          <caret line="29" selection-start-line="29" selection-end-line="29" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_feature-table_merge-seqs.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="360">
+          <caret line="24" selection-start-line="24" selection-end-line="24" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_feature-table_merge-taxa.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="360">
+          <caret line="24" selection-start-line="24" selection-end-line="24" />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/qiime_composition_ancom.xml">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="705">
+          <caret line="47" column="65" selection-start-line="47" selection-start-column="65" selection-end-line="47" selection-end-column="65" />
+        </state>
+      </provider>
+    </entry>
+  </component>
+  <component name="masterDetails">
+    <states>
+      <state key="GlobalLibrariesConfigurable.UI">
+        <settings>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.2" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
+      <state key="JdkListConfigurable.UI">
+        <settings>
+          <last-edited>1.8</last-edited>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.2" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
+      <state key="ProjectJDKs.UI">
+        <settings>
+          <last-edited>1.8</last-edited>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.2" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
+      <state key="ProjectLibrariesConfigurable.UI">
+        <settings>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.2" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
+    </states>
+  </component>
+</project>
\ No newline at end of file
--- a/qiime2/qiime_citation.xml	Wed Jul 17 03:05:17 2019 -0400
+++ b/qiime2/qiime_citation.xml	Wed Jul 17 03:26:16 2019 -0400
@@ -5,7 +5,7 @@
         @article{10.7287/peerj.preprints.27295v2,
          title = {QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science},
          author = {Bolyen, Evan and Rideout, Jai Ram and Dillon, Matthew R and Bokulich, Nicholas A and Abnet, Christian and Al-Ghalith, Gabriel A and Alexander, Harriet and Alm, Eric J and Arumugam, Manimozhiyan and Asnicar, Francesco and Bai, Yang and Bisanz, Jordan E and Bittinger, Kyle and Brejnrod, Asker and Brislawn, Colin J and Brown, C Titus and Callahan, Benjamin J and Caraballo-Rodríguez, Andrés Mauricio and Chase, John and Cope, Emily and Da Silva, Ricardo and Dorrestein, Pieter C and Douglas, Gavin M and Durall, Daniel M and Duvallet, Claire and Edwardson, Christian F and Ernst, Madeleine and Estaki, Mehrbod and Fouquier, Jennifer and Gauglitz, Julia M and Gibson, Deanna L and Gonzalez, Antonio and Gorlick, Kestrel and Guo, Jiarong and Hillmann, Benjamin and Holmes, Susan and Holste, Hannes and Huttenhower, Curtis and Huttley, Gavin and Janssen, Stefan and Jarmusch, Alan K and Jiang, Lingjing and Kaehler, Benjamin and Kang, Kyo Bin and Keefe, Christopher R and Keim, Paul and Kelley, Scott T and Knights, Dan and Koester, Irina and Kosciolek, Tomasz and Kreps, Jorden and Langille, Morgan GI and Lee, Joslynn and Ley, Ruth and Liu, Yong-Xin and Loftfield, Erikka and Lozupone, Catherine and Maher, Massoud and Marotz, Clarisse and Martin, Bryan D and McDonald, Daniel and McIver, Lauren J and Melnik, Alexey V and Metcalf, Jessica L and Morgan, Sydney C and Morton, Jamie and Naimey, Ahmad Turan and Navas-Molina, Jose A and Nothias, Louis Felix and Orchanian, Stephanie B and Pearson, Talima and Peoples, Samuel L and Petras, Daniel and Preuss, Mary Lai and Pruesse, Elmar and Rasmussen, Lasse Buur and Rivers, Adam and Robeson, II, Michael S and Rosenthal, Patrick and Segata, Nicola and Shaffer, Michael and Shiffer, Arron and Sinha, Rashmi and Song, Se Jin and Spear, John R and Swafford, Austin D and Thompson, Luke R and Torres, Pedro J and Trinh, Pauline and Tripathi, Anupriya and Turnbaugh, Peter J and Ul-Hasan, Sabah and van der Hooft, Justin JJ and Vargas, Fernando and Vázquez-Baeza, Yoshiki and Vogtmann, Emily and von Hippel, Max and Walters, William and Wan, Yunhu and Wang, Mingxun and Warren, Jonathan and Weber, Kyle C and Williamson, Chase HD and Willis, Amy D and Xu, Zhenjiang Zech and Zaneveld, Jesse R and Zhang, Yilong and Zhu, Qiyun and Knight, Rob and Caporaso, J Gregory},
-         year = 2019,
+         year = 2018,
          month = dec,
          keywords = {microbiome, bioinformatics, data science, software, microbial ecology, reproducibility},
          abstract = {
--- a/qiime2/qiime_sample-classifier_maturity-index.xml	Wed Jul 17 03:05:17 2019 -0400
+++ b/qiime2/qiime_sample-classifier_maturity-index.xml	Wed Jul 17 03:26:16 2019 -0400
@@ -77,7 +77,7 @@
 	 --p-random-state="$prandomstate"
 	#end if
 	;
-	qiime tools export ovisualization.qzv --output-dir out   && mkdir -p '$ovisualization.files_path'
+	qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
 	&& cp -r out/* '$ovisualization.files_path'
 	&& mv '$ovisualization.files_path/index.html' '$ovisualization'
 	]]>