|
0
|
1 <?xml version="1.0" ?>
|
|
|
2 <tool id="qiime_diversity-lib_observed-features" name="qiime diversity-lib observed-features"
|
|
|
3 version="2020.8">
|
|
|
4 <description>Observed Features</description>
|
|
|
5 <requirements>
|
|
|
6 <requirement type="package" version="2020.8">qiime2</requirement>
|
|
|
7 </requirements>
|
|
|
8 <command><![CDATA[
|
|
|
9 qiime diversity-lib observed-features
|
|
|
10
|
|
|
11 #if $itable:
|
|
|
12 --i-table
|
|
|
13 #end if
|
|
|
14
|
|
|
15 --o-vector=ovector
|
|
|
16
|
|
|
17 #if str($examples) != 'None':
|
|
|
18 --examples=$examples
|
|
|
19 #end if
|
|
|
20
|
|
|
21 ;
|
|
|
22 cp ovector.qza $ovector
|
|
|
23
|
|
|
24 ]]></command>
|
|
|
25 <inputs>
|
|
|
26 <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency | PresenceAbsence] The feature table containing the samples for which the number of observed features should be calculated. Table values will be converted to presence/absence. [required]" name="itable" selected="False" type="boolean" />
|
|
|
27 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
|
|
|
28
|
|
|
29 </inputs>
|
|
|
30
|
|
|
31 <outputs>
|
|
|
32 <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" />
|
|
|
33
|
|
|
34 </outputs>
|
|
|
35
|
|
|
36 <help><![CDATA[
|
|
|
37 Observed Features
|
|
|
38 ###############################################################
|
|
|
39
|
|
|
40 Compute the number of observed features for each sample in a feature table
|
|
|
41
|
|
|
42 Parameters
|
|
|
43 ----------
|
|
|
44 table : FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]
|
|
|
45 The feature table containing the samples for which the number of
|
|
|
46 observed features should be calculated. Table values will be converted
|
|
|
47 to presence/absence.
|
|
|
48
|
|
|
49 Returns
|
|
|
50 -------
|
|
|
51 vector : SampleData[AlphaDiversity]
|
|
|
52 Vector containing per-sample counts of observed features.
|
|
|
53 ]]></help>
|
|
|
54 <macros>
|
|
|
55 <import>qiime_citation.xml</import>
|
|
|
56 </macros>
|
|
|
57 <expand macro="qiime_citation"/>
|
|
|
58 </tool> |
