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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-table_subsample" name="qiime feature-table subsample"
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3 version="2020.8">
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4 <description>Subsample table</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime feature-table subsample
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10
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11 --i-table=$itable
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12
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13 --p-subsampling-depth=$psubsamplingdepth
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14
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15 --p-axis=$paxis
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16
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17 --o-sampled-table=osampledtable
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18
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19 #if str($examples) != 'None':
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20 --examples=$examples
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21 #end if
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22
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23 ;
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24 cp osampledtable.qza $osampledtable
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25
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26 ]]></command>
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27 <inputs>
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28 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be sampled. [required]" name="itable" optional="False" type="data" />
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29 <param label="--p-subsampling-depth: INTEGER Range(1, None) The total number of samples or features to be randomly sampled. Samples or features that are reduced to a zero sum will not be included in the resulting table. [required]" name="psubsamplingdepth" optional="False" type="text" />
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30 <param label="--p-axis: " name="paxis" optional="False" type="select">
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31 <option value="sample">sample</option>
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32 <option value="feature">feature</option>
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33 </param>
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34 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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35
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36 </inputs>
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37
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38 <outputs>
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39 <data format="qza" label="${tool.name} on ${on_string}: sampledtable.qza" name="osampledtable" />
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40
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41 </outputs>
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42
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43 <help><![CDATA[
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44 Subsample table
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45 ###############################################################
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46
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47 Randomly pick samples or features, without replacement, from the table.
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48
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49 Parameters
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50 ----------
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51 table : FeatureTable[Frequency]
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52 The feature table to be sampled.
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53 subsampling_depth : Int % Range(1, None)
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54 The total number of samples or features to be randomly sampled. Samples
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55 or features that are reduced to a zero sum will not be included in the
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56 resulting table.
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57 axis : Str % Choices('sample', 'feature')
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58 The axis to sample over. If "sample" then samples will be randomly
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59 selected to be retained. If "feature" then a random set of features
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60 will be selected to be retained.
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61
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62 Returns
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63 -------
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64 sampled_table : FeatureTable[Frequency]
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65 The resulting subsampled feature table.
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66 ]]></help>
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67 <macros>
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68 <import>qiime_citation.xml</import>
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69 </macros>
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70 <expand macro="qiime_citation"/>
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71 </tool> |
