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1 <?xml version="1.0" ?>
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2 <tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table"
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3 version="2020.8">
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4 <description>Remove features from table if they\'re not present in tree.</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime phylogeny filter-table
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10
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11 --i-table=$itable
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12
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13 --i-tree=$itree
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14
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15 --o-filtered-table=ofilteredtable
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16
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17 #if str($examples) != 'None':
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18 --examples=$examples
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19 #end if
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20
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21 ;
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22 cp ofilteredtable.qza $ofilteredtable
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23
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24 ]]></command>
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25 <inputs>
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26 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data" />
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27 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table. [required]" name="itree" optional="False" type="data" />
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28 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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29
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30 </inputs>
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31
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32 <outputs>
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33 <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable" />
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34
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35 </outputs>
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36
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37 <help><![CDATA[
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38 Remove features from table if they\'re not present in tree.
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39 ###############################################################
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40
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41 Remove features from a feature table if their identifiers are not tip
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42 identifiers in tree.
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43
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44 Parameters
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45 ----------
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46 table : FeatureTable[Frequency]
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47 Feature table that features should be filtered from.
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48 tree : Phylogeny[Rooted | Unrooted]
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49 Tree where tip identifiers are the feature identifiers that should be
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50 retained in the table.
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51
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52 Returns
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53 -------
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54 filtered_table : FeatureTable[Frequency]
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55 The resulting feature table.
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56 ]]></help>
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57 <macros>
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58 <import>qiime_citation.xml</import>
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59 </macros>
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60 <expand macro="qiime_citation"/>
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61 </tool> |
