|
0
|
1 <?xml version="1.0" ?>
|
|
|
2 <tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize"
|
|
|
3 version="2020.8">
|
|
|
4 <description>Summarize parameter and feature extraction information for a trained estimator.</description>
|
|
|
5 <requirements>
|
|
|
6 <requirement type="package" version="2020.8">qiime2</requirement>
|
|
|
7 </requirements>
|
|
|
8 <command><![CDATA[
|
|
|
9 qiime sample-classifier summarize
|
|
|
10
|
|
|
11 --i-sample-estimator=$isampleestimator
|
|
|
12
|
|
|
13 --o-visualization=ovisualization
|
|
|
14
|
|
|
15 #if str($examples) != 'None':
|
|
|
16 --examples=$examples
|
|
|
17 #end if
|
|
|
18
|
|
|
19 ;
|
|
|
20 cp otesttable.qza $otesttable
|
|
|
21
|
|
|
22 ;
|
|
|
23 qiime tools export ovisualization.qzv --output-path out
|
|
|
24 && mkdir -p '$ovisualization.files_path'
|
|
|
25 && cp -r out/* '$ovisualization.files_path'
|
|
|
26 && mv '$ovisualization.files_path/index.html' '$ovisualization'
|
|
|
27
|
|
|
28 ]]></command>
|
|
|
29 <inputs>
|
|
|
30 <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data" />
|
|
|
31 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
|
|
|
32
|
|
|
33 </inputs>
|
|
|
34
|
|
|
35 <outputs>
|
|
|
36 <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
|
|
|
37
|
|
|
38 </outputs>
|
|
|
39
|
|
|
40 <help><![CDATA[
|
|
|
41 Summarize parameter and feature extraction information for a trained estimator.
|
|
|
42 ###############################################################
|
|
|
43
|
|
|
44
|
|
|
45 Summarize parameter and feature extraction information for a trained
|
|
|
46 estimator.
|
|
|
47
|
|
|
48 Parameters
|
|
|
49 ----------
|
|
|
50 sample_estimator : SampleEstimator[Classifier | Regressor]
|
|
|
51 Sample estimator trained with fit_classifier or fit_regressor.
|
|
|
52
|
|
|
53 Returns
|
|
|
54 -------
|
|
|
55 visualization : Visualization
|
|
|
56 ]]></help>
|
|
|
57 <macros>
|
|
|
58 <import>qiime_citation.xml</import>
|
|
|
59 </macros>
|
|
|
60 <expand macro="qiime_citation"/>
|
|
|
61 </tool> |
