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comparison qiime2-2020.8/qiime_sample-classifier_summarize.xml @ 0:5c352d975ef7 draft

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author florianbegusch
date Thu, 03 Sep 2020 09:33:04 +0000
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1 <?xml version="1.0" ?>
2 <tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize"
3 version="2020.8">
4 <description>Summarize parameter and feature extraction information for a trained estimator.</description>
5 <requirements>
6 <requirement type="package" version="2020.8">qiime2</requirement>
7 </requirements>
8 <command><![CDATA[
9 qiime sample-classifier summarize
10
11 --i-sample-estimator=$isampleestimator
12
13 --o-visualization=ovisualization
14
15 #if str($examples) != 'None':
16 --examples=$examples
17 #end if
18
19 ;
20 cp otesttable.qza $otesttable
21
22 ;
23 qiime tools export ovisualization.qzv --output-path out
24 && mkdir -p '$ovisualization.files_path'
25 && cp -r out/* '$ovisualization.files_path'
26 && mv '$ovisualization.files_path/index.html' '$ovisualization'
27
28 ]]></command>
29 <inputs>
30 <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data" />
31 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
32
33 </inputs>
34
35 <outputs>
36 <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
37
38 </outputs>
39
40 <help><![CDATA[
41 Summarize parameter and feature extraction information for a trained estimator.
42 ###############################################################
43
44
45 Summarize parameter and feature extraction information for a trained
46 estimator.
47
48 Parameters
49 ----------
50 sample_estimator : SampleEstimator[Classifier | Regressor]
51 Sample estimator trained with fit_classifier or fit_regressor.
52
53 Returns
54 -------
55 visualization : Visualization
56 ]]></help>
57 <macros>
58 <import>qiime_citation.xml</import>
59 </macros>
60 <expand macro="qiime_citation"/>
61 </tool>