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1 <?xml version="1.0" ?>
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2 <tool id="qiime_gneiss_correlation-clustering" name="qiime gneiss correlation-clustering" version="2019.4">
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3 <description> - Hierarchical clustering using feature correlation.</description>
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4 <requirements>
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5 <requirement type="package" version="2019.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime gneiss correlation-clustering
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9
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10 --i-table=$itable
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11
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12 #if $ppseudocount:
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13 --p-pseudocount=$ppseudocount
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14 #end if
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15
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16 --o-clustering=oclustering
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17 ;
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18 cp oclustering.qza $oclustering
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19 ]]></command>
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20 <inputs>
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21 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table containing the samples in which the columns will be clustered. [required]" name="itable" optional="False" type="data"/>
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22 <param label="--p-pseudocount: NUMBER The value to add to zero counts in the feature table. [default: 0.5]" name="ppseudocount" optional="True" type="float" value="0.5"/>
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23 </inputs>
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24 <outputs>
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25 <data format="qza" label="${tool.name} on ${on_string}: clustering.qza" name="oclustering"/>
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26 </outputs>
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27 <help><![CDATA[
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28 Hierarchical clustering using feature correlation.
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29 ##################################################
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30
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31 Build a bifurcating tree that represents a hierarchical clustering of
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32 features. The hiearchical clustering uses Ward hierarchical clustering
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33 based on the degree of proportionality between features.
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34
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35 Parameters
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36 ----------
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37 table : FeatureTable[Frequency]
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38 The feature table containing the samples in which the columns will be
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39 clustered.
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40 pseudocount : Float, optional
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41 The value to add to zero counts in the feature table.
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42
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43 Returns
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44 -------
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45 clustering : Hierarchy
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46 A hierarchy of feature identifiers where each tip corresponds to the
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47 feature identifiers in the table. This tree can contain tip ids that
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48 are not present in the table, but all feature ids in the table must be
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49 present in this tree.
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50 ]]></help>
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51 <macros>
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52 <import>qiime_citation.xml</import>
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53 </macros>
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54 <expand macro="qiime_citation"/>
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55 </tool>
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