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1 <?xml version="1.0" ?>
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2 <tool id="qiime_phylogeny_fasttree" name="qiime phylogeny fasttree" version="2019.4">
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3 <description> - Construct a phylogenetic tree with FastTree.</description>
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4 <requirements>
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5 <requirement type="package" version="2019.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime phylogeny fasttree
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9
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10 --i-alignment=$ialignment
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11
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12 #set $pnthreads = '${GALAXY_SLOTS:-4}'
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13 #if str($pnthreads):
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14 --p-n-threads="$pnthreads"
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15 #end if
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16
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17 --o-tree=otree
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18 ;
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19 cp otree.qza $otree
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20 ]]></command>
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21 <inputs>
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22 <param format="qza,no_unzip.zip" label="--i-alignment: ARTIFACT FeatureData[AlignedSequence] Aligned sequences to be used for phylogenetic reconstruction. [required]" name="ialignment" optional="False" type="data"/>
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23 </inputs>
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24 <outputs>
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25 <data format="qza" label="${tool.name} on ${on_string}: tree.qza" name="otree"/>
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26 </outputs>
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27 <help><![CDATA[
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28 Construct a phylogenetic tree with FastTree.
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29 ############################################
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30
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31 Construct a phylogenetic tree with FastTree.
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32
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33 Parameters
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34 ----------
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35 alignment : FeatureData[AlignedSequence]
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36 Aligned sequences to be used for phylogenetic reconstruction.
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37
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38 Returns
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39 -------
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40 tree : Phylogeny[Unrooted]
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41 The resulting phylogenetic tree.
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42 ]]></help>
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43 <macros>
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44 <import>qiime_citation.xml</import>
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45 </macros>
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46 <expand macro="qiime_citation"/>
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47 </tool>
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