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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs" version="2018.4">
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3 <description> - View sequence associated with each feature</description>
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4 <requirements>
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5 <requirement type="package" version="2018.4">qiime2</requirement>
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6 </requirements>
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7 <command>
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8 <![CDATA[
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9 qiime feature-table tabulate-seqs --i-data=$idata
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10
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11 #if str($cmdconfig) != 'None':
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12 --cmd-config=$cmdconfig
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13 #end if
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14 --o-visualization=ovisualization;
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15
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16 qiime tools export ovisualization.qzv --output-dir out && mkdir -p '$ovisualization.files_path'
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17 && cp -r out/* '$ovisualization.files_path'
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18 && mv '$ovisualization.files_path/index.html' '$ovisualization'
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19 ]]>
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20 </command>
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21 <inputs>
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22 <param format="qza,no_unzip.zip" label="--i-data: FeatureData[Sequence] The feature sequences to be tabulated. [required]" name="idata" optional="False" type="data"/>
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23 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
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24 </inputs>
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25 <outputs>
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26 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
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27 </outputs>
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28 <help>
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29 <![CDATA[
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30 View sequence associated with each feature
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31 -------------------------------------------
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32
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33 Generate tabular view of feature identifier to sequence mapping, including
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34 links to BLAST each sequence against the NCBI nt database.
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35
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36 Parameters
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37 ----------
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38 data : FeatureData[Sequence]
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39 The feature sequences to be tabulated.
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40
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41 Returns
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42 -------
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43 visualization : Visualization
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44 \
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45 ]]>
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46 </help>
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47 <macros>
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48 <import>qiime_citation.xml</import>
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49 </macros>
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50 <expand macro="qiime_citation" />
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51 </tool>
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