2
+ − 1 <?xml version="1.0" ?>
+ − 2 <tool id="qiime_phylogeny_fasttree" name="qiime phylogeny fasttree" version="2019.4">
+ − 3 <description> - Construct a phylogenetic tree with FastTree.</description>
+ − 4 <requirements>
+ − 5 <requirement type="package" version="2019.4">qiime2</requirement>
+ − 6 </requirements>
+ − 7 <command><![CDATA[
+ − 8 qiime phylogeny fasttree
+ − 9
+ − 10 --i-alignment=$ialignment
+ − 11
+ − 12 #set $pnthreads = '${GALAXY_SLOTS:-4}'
+ − 13 #if str($pnthreads):
+ − 14 --p-n-threads="$pnthreads"
+ − 15 #end if
+ − 16
+ − 17 --o-tree=otree
+ − 18 ;
+ − 19 cp otree.qza $otree
+ − 20 ]]></command>
+ − 21 <inputs>
+ − 22 <param format="qza,no_unzip.zip" label="--i-alignment: ARTIFACT FeatureData[AlignedSequence] Aligned sequences to be used for phylogenetic reconstruction. [required]" name="ialignment" optional="False" type="data"/>
+ − 23 </inputs>
+ − 24 <outputs>
+ − 25 <data format="qza" label="${tool.name} on ${on_string}: tree.qza" name="otree"/>
+ − 26 </outputs>
+ − 27 <help><![CDATA[
+ − 28 Construct a phylogenetic tree with FastTree.
+ − 29 ############################################
+ − 30
+ − 31 Construct a phylogenetic tree with FastTree.
+ − 32
+ − 33 Parameters
+ − 34 ----------
+ − 35 alignment : FeatureData[AlignedSequence]
+ − 36 Aligned sequences to be used for phylogenetic reconstruction.
+ − 37
+ − 38 Returns
+ − 39 -------
+ − 40 tree : Phylogeny[Unrooted]
+ − 41 The resulting phylogenetic tree.
+ − 42 ]]></help>
+ − 43 <macros>
+ − 44 <import>qiime_citation.xml</import>
+ − 45 </macros>
+ − 46 <expand macro="qiime_citation"/>
+ − 47 </tool>
