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comparison qiime2/qiime_diversity_pcoa.xml @ 0:51b9b6b57732 draft

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author florianbegusch
date Thu, 24 May 2018 05:21:07 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_diversity_pcoa" name="qiime diversity pcoa" version="2018.4">
3 <description> - Principal Coordinate Analysis</description>
4 <requirements>
5 <requirement type="package" version="2018.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime diversity pcoa --i-distance-matrix=$idistancematrix
9
10 #if str($cmdconfig) != 'None':
11 --cmd-config=$cmdconfig
12 #end if
13
14 --o-pcoa=opcoa;
15
16 cp opcoa.qza $opcoa;
17 ]]></command>
18 <inputs>
19 <param format="qza,no_unzip.zip" label="--i-distance-matrix: DistanceMatrix The distance matrix on which PCoA should be computed. [required]" name="idistancematrix" optional="False" type="data"/>
20 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
21 </inputs>
22 <outputs>
23 <data format="qza" label="${tool.name} on ${on_string}: pcoa.qza" name="opcoa"/>
24 </outputs>
25 <help><![CDATA[
26 Principal Coordinate Analysis
27 ------------------------------
28
29 Apply principal coordinate analysis.
30
31 Parameters
32 ----------
33 distance_matrix : DistanceMatrix
34 The distance matrix on which PCoA should be computed.
35
36 Returns
37 -------
38 pcoa : PCoAResults
39 The resulting PCoA matrix.
40 ]]>
41 </help>
42 <macros>
43 <import>qiime_citation.xml</import>
44 </macros>
45 <expand macro="qiime_citation" />
46 </tool>