<?xml version="1.0" ?>
<tool id="qiime_diversity_pcoa" name="qiime diversity pcoa" version="2018.4">
	<description> - Principal Coordinate Analysis</description>
	<requirements>
		<requirement type="package" version="2018.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
  qiime diversity pcoa --i-distance-matrix=$idistancematrix
  
  #if str($cmdconfig) != 'None':
   --cmd-config=$cmdconfig
  #end if
  
   --o-pcoa=opcoa;
   
  cp opcoa.qza $opcoa;
  ]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-distance-matrix: DistanceMatrix The distance matrix on which PCoA should be computed.  [required]" name="idistancematrix" optional="False" type="data"/>
		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: pcoa.qza" name="opcoa"/>
	</outputs>
	<help><![CDATA[
Principal Coordinate Analysis
------------------------------

Apply principal coordinate analysis.

Parameters
----------
distance_matrix : DistanceMatrix
    The distance matrix on which PCoA should be computed.

Returns
-------
pcoa : PCoAResults
    The resulting PCoA matrix.
      ]]>
	</help>
<macros>
	<import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation" />
</tool>