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comparison qiime2/qiime_phylogeny_midpoint-root.xml @ 0:51b9b6b57732 draft

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author florianbegusch
date Thu, 24 May 2018 05:21:07 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2018.4">
3 <description> - Midpoint root an unrooted phylogenetic tree.</description>
4 <requirements>
5 <requirement type="package" version="2018.4">qiime2</requirement>
6 </requirements>
7 <command>
8 <![CDATA[
9 qiime phylogeny midpoint-root --i-tree=$itree
10
11 #if str($cmdconfig) != 'None':
12 --cmd-config=$cmdconfig
13 #end if
14 --o-rooted-tree=orootedtree;
15
16 cp orootedtree.qza $orootedtree;
17 ]]>
18 </command>
19 <inputs>
20 <param format="qza,no_unzip.zip" label="--i-tree: Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/>
21 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
22 </inputs>
23 <outputs>
24 <data format="qza" label="${tool.name} on ${on_string}: rooted-tree.qza" name="orootedtree"/>
25 </outputs>
26 <help>
27 <![CDATA[
28 Midpoint root an unrooted phylogenetic tree.
29 ---------------------------------------------
30
31 Midpoint root an unrooted phylogenetic tree.
32
33 Parameters
34 ----------
35 tree : Phylogeny[Unrooted]
36 The phylogenetic tree to be rooted.
37
38 Returns
39 -------
40 rooted_tree : Phylogeny[Rooted]
41 The rooted phylogenetic tree.
42 ]]>
43 </help>
44 <macros>
45 <import>qiime_citation.xml</import>
46 </macros>
47 <expand macro="qiime_citation" />
48 </tool>