<?xml version="1.0" ?>
<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2018.4">
	<description> - Midpoint root an unrooted phylogenetic tree.</description>
	<requirements>
		<requirement type="package" version="2018.4">qiime2</requirement>
	</requirements>
	<command>
		<![CDATA[
		qiime phylogeny midpoint-root --i-tree=$itree

	#if str($cmdconfig) != 'None':
	 --cmd-config=$cmdconfig
	#end if
	 --o-rooted-tree=orootedtree;

	cp orootedtree.qza $orootedtree;
	]]>
	</command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-tree: Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/>
		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: rooted-tree.qza" name="orootedtree"/>
	</outputs>
	<help>
		<![CDATA[
Midpoint root an unrooted phylogenetic tree.
---------------------------------------------

Midpoint root an unrooted phylogenetic tree.

Parameters
----------
tree : Phylogeny[Unrooted]
    The phylogenetic tree to be rooted.

Returns
-------
rooted_tree : Phylogeny[Rooted]
    The rooted phylogenetic tree.
    ]]>
	</help>
<macros>
	<import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation" />
</tool>