Mercurial > repos > frogs > frogs_2_0_0

annotate test-data/references/06-affiliationsStat.html @ 0:76c750c5f0d1 draft default tip

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planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
author frogs
date Thu, 25 Oct 2018 05:01:13 -0400
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0
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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1 <!DOCTYPE html>
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2 <!--
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3 # Copyright (C) 2015 INRA
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4 #
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5 # This program is free software: you can redistribute it and/or modify
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6 # it under the terms of the GNU General Public License as published by
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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7 # the Free Software Foundation, either version 3 of the License, or
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8 # (at your option) any later version.
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9 #
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10 # This program is distributed in the hope that it will be useful,
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11 # but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 # GNU General Public License for more details.
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14 #
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15 # You should have received a copy of the GNU General Public License
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16 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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17 -->
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18 <html>
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19 <head>
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20 <title>FROGS Affiliations stat</title>
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21 <meta charset="UTF-8">
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22 <meta name="version" content="1.3.0">
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23 <!-- CSS -->
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24 <link rel="stylesheet" href="https://cdn.datatables.net/1.10.6/css/jquery.dataTables.css"></link>
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25 <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/css/bootstrap.min.css"></link>
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26 <style type="text/css">
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27 /*
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28 * jDistrib 0.1.0 - CSS jDistrib Library
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29 *
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30 * Copyright (c) 2015 Escudie Frederic
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31 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
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32 */
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33 #sunburst-graph{margin-left:auto;margin-right:auto}.jDistrib-walk-rank{height:100%;margin-right:2px;padding:8px;float:left;border-top-right-radius:7px;border-bottom-right-radius:7px;cursor:pointer;box-shadow:1px 1px 1px #555}.jDistrib-walk-rank-size{margin-left:5px;padding:4px;background-color:#FFF;border-radius:9px;text-align:center;font-size:10px;font-family:sans-serif}.jDistrib-root-label{font-weight:700;cursor:pointer}.jDistrib-arc-label{cursor:pointer}.jDistrib-arc{cursor:pointer;stroke:#fff;fill-rule:evenodd}.jDistrib-tooltip{position:absolute;padding:10px;font:12px sans-serif;background:#b0c4de;border:0;border-radius:8px;pointer-events:none}.jDistrib-empty-details{color:#31708F;background-color:#D9EDF7;padding:15px;margin-bottom:20px;border:1px solid transparent;border-radius:4px}.jDistrib-table-details>tbody>tr:nth-of-type(2n+1){background-color:#F5F5F5}.jDistrib-table-details{border:1px solid #DDD;border-radius:8px;border-spacing:1px;border-collapse:separate}.jDistrib-table-details td,th{padding:2px 8px}.jDistrib-table-details .number{text-align:right}.jDistrib-export-toggle{height:30px;width:30px;padding:1px}.jDistrib-export-toggle div{background-color:#636363;border-radius:2px;height:3px;margin-top:2px;margin-bottom:2px}
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34 </style>
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35 <style type="text/css">
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36 #js-alert {
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37 width: 90%;
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38 margin-right: auto;
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39 margin-left: auto;
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40 }
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41 #content {
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42 width: 90%;
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43 margin-right: auto;
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44 margin-left: auto;
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45 }
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46 ul.nav-tabs {
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47 margin-bottom: 30px;
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48 }
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49 .clear {
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50 clear: both;
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51 height: 0px;
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52 width: 100%;
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53 float: none !important;
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54 }
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55 .set-datatype {
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56 width: 200px;
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57 margin-left: auto;
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58 margin-right: auto;
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59 }
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60 .table-action {
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61 vertical-align: middle;
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62 margin-right: 20px;
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63 }
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64 .fusion-left {
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65 position:relative;
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66 z-index:2;
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67 margin-right: 0px;
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68 margin-bottom: 0px;
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69 border-top-left-radius: 4px;
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70 border-bottom-left-radius: 4px;
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71 }
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72 .fusion-right {
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73 border-top-left-radius: 0px;
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74 border-bottom-left-radius: 0px;
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75 margin-left:-6px;
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76 }
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77 select.table-action {
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78 padding: 6px 12px;
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79 font-size: 14px;
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80 font-weight: 400;
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81 line-height: 1.42857;
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82 box-shadow: 0px 1px 1px rgba(0, 0, 0, 0.075);
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83 color: #555;
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84 background-color: #FFF;
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85 background-image: none;
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86 border: 1px solid #CCC;
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87 }
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88 #sunburst-detail table {
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89 margin-left: auto;
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90 margin-right: auto;
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91 }
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92 #sunburst-detail p {
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93 text-align: center;
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94 }
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95 #sunburst-menu input {
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96 margin-right: 10px;
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97 }
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98 #display-global-sunburst {
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99 margin-bottom: 40px;
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100 }
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101 </style>
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102 <!-- JS -->
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103 <script type="text/javascript" src="http://code.jquery.com/jquery-2.1.3.min.js"></script>
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104 <script type="text/javascript" src="http://code.highcharts.com/4.1.4/highcharts.js"></script>
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105 <script type="text/javascript" src="http://code.highcharts.com/4.1.4/highcharts-more.js"></script>
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106 <script type="text/javascript" src="http://code.highcharts.com/4.1.4/modules/heatmap.js"></script>
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107 <script type="text/javascript" src="http://code.highcharts.com/4.1.4/modules/exporting.js"></script>
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108 <script type="text/javascript" src="https://cdn.datatables.net/1.10.6/js/jquery.dataTables.min.js"></script>
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109 <script type="text/javascript" src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/js/bootstrap.min.js"></script>
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110 <script type="text/javascript">
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111 /*
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112 * d3 v3 - JavaScript d3 Library
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113 * (http://d3js.org/)
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114 */
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115 !function(){function n(n){return n&&(n.ownerDocument||n.document||n).documentElement}function t(n){return n&&(n.ownerDocument&&n.ownerDocument.defaultView||n.document&&n||n.defaultView)}function e(n,t){return t>n?-1:n>t?1:n>=t?0:0/0}function r(n){return null===n?0/0:+n}function u(n){return!isNaN(n)}function i(n){return{left:function(t,e,r,u){for(arguments.length<3&&(r=0),arguments.length<4&&(u=t.length);u>r;){var i=r+u>>>1;n(t[i],e)<0?r=i+1:u=i}return r},right:function(t,e,r,u){for(arguments.length<3&&(r=0),arguments.length<4&&(u=t.length);u>r;){var i=r+u>>>1;n(t[i],e)>0?u=i:r=i+1}return r}}}function o(n){return n.length}function a(n){for(var t=1;n*t%1;)t*=10;return t}function c(n,t){for(var e in t)Object.defineProperty(n.prototype,e,{value:t[e],enumerable:!1})}function l(){this._=Object.create(null)}function s(n){return(n+="")===pa||n[0]===va?va+n:n}function f(n){return(n+="")[0]===va?n.slice(1):n}function h(n){return s(n)in this._}function g(n){return(n=s(n))in this._&&delete 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76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
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76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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arguments.length?(l&&s?(g=!!t[0],p=!!t[1]):l?g=!!t:s&&(p=!!t),n):l&&s?[g,p]:l?g:s?p:null},n.extent=function(t){var e,r,u,i,c;return arguments.length?(l&&(e=t[0],r=t[1],s&&(e=e[0],r=r[0]),o=[e,r],l.invert&&(e=l(e),r=l(r)),e>r&&(c=e,e=r,r=c),(e!=f[0]||r!=f[1])&&(f=[e,r])),s&&(u=t[0],i=t[1],l&&(u=u[1],i=i[1]),a=[u,i],s.invert&&(u=s(u),i=s(i)),u>i&&(c=u,u=i,i=c),(u!=h[0]||i!=h[1])&&(h=[u,i])),n):(l&&(o?(e=o[0],r=o[1]):(e=f[0],r=f[1],l.invert&&(e=l.invert(e),r=l.invert(r)),e>r&&(c=e,e=r,r=c))),s&&(a?(u=a[0],i=a[1]):(u=h[0],i=h[1],s.invert&&(u=s.invert(u),i=s.invert(i)),u>i&&(c=u,u=i,i=c))),l&&s?[[e,u],[r,i]]:l?[e,r]:s&&[u,i])},n.clear=function(){return n.empty()||(f=[0,0],h=[0,0],o=a=null),n},n.empty=function(){return!!l&&f[0]==f[1]||!!s&&h[0]==h[1]},ta.rebind(n,c,"on")};var 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76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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120 </script>
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121 <script type="text/javascript">
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122 /*
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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123 * jDistrib alpha version - JavaScript jDistrib Library
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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124 *
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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125 * Copyright (c) 2015 Escudie Frederic
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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126 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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127 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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128 var jDistrib={pg_selector:{sunburst:null,walktrace:null,menu:null,detail:null},access:{graph:null,tooltip:null},graph:{sunburst:{padding:30,width:null,height:null,_radius:null,_arc:null,_x:null,_y:null},labels:{padding:7,font_size:15},colors:{set:["#1f77b4","#ff7f0e","#2ca02c","#d62728","#9467bd","#8c564b","#e377c2","#bcbd22","#17becf","#aec7e8","#ffbb78","#98df8a","#ff9896","#c5b0d5","#c49c94","#f7b6d2","#c7c7c7","#dbdb8d","#9edae5"],neutral:"#dadaeb",radialization:15,start_depth:1}},tree:{current_root:null,root_size:0}},cJDistrib=function(t,e){Object.deepExtend(jDistrib,e),null==jDistrib.pg_selector.menu||d3.select(jDistrib.pg_selector.menu).empty()||_setMenu(),null==jDistrib.pg_selector.detail||d3.select(jDistrib.pg_selector.detail).empty()||(jQuery(jDistrib.pg_selector.sunburst).on("jd.walk",function(){clearDetails()}),jQuery(jDistrib.pg_selector.sunburst).on("jd.displayDetails",function(t,e){displayDetails(e)})),null==jDistrib.pg_selector.walktrace||d3.select(jDistrib.pg_selector.walktrace).empty()||jQuery(jDistrib.pg_selector.sunburst).on("jd.walk",function(t,e){walkTraceUpdate(e)}),_setSVG(),_load(t),walkTo(jDistrib.tree.current_root,0)},_setSVG=function(){var t=d3.select(jDistrib.pg_selector.sunburst).append("svg").attr("width",jDistrib.graph.sunburst.width).attr("height",jDistrib.graph.sunburst.height).append("g").attr("transform","translate("+jDistrib.graph.sunburst.width/2+","+jDistrib.graph.sunburst.height/2+")");jDistrib.access.graph=t,jDistrib.graph._radius=Math.min(jDistrib.graph.sunburst.width,jDistrib.graph.sunburst.height)/2-jDistrib.graph.sunburst.padding,(jDistrib.graph.sunburst.padding>=jDistrib.graph.sunburst.width+10||jDistrib.graph.sunburst.padding>=jDistrib.graph.sunburst.height+10)&&(jDistrib.graph._radius=Math.min(jDistrib.graph.sunburst.width,jDistrib.graph.sunburst.height)/2),jDistrib.graph._x=d3.scale.linear().range([0,2*Math.PI]),jDistrib.graph._y=d3.scale.pow().exponent(1.3).domain([0,1]).range([0,jDistrib.graph._radius]),jDistrib.graph._arc=d3.svg.arc().startAngle(function(t){return getStartAngle(t)}).endAngle(function(t){return getEndAngle(t)}).innerRadius(function(t){return getInnerRadius(t)}).outerRadius(function(t){return getOuterRadius(t)}),jDistrib.access.tooltip=d3.select(jDistrib.pg_selector.sunburst).append("div").attr("class","jDistrib-tooltip").style("opacity",0)},_load=function(t){jDistrib.tree.current_root=t,jDistrib.tree.root_size=getSize(t);var e=d3.layout.partition().value(function(t){return t.size});addID(t,0),addDepth(t,0);d3.select(jDistrib.pg_selector.sunburst+" g").datum(t).selectAll("path").data(e.nodes).enter().append("path").attr("d",jDistrib.graph._arc).attr("class","jDistrib-arc").attr("id",function(t){return"sb-arc-"+t.sunburst_id}).on("click",click).on("dblclick",dblclick).on("mousemove",hover).on("mouseout",function(){hideTooltip()}).each(stash),getColorsByFirstNodes(t);changeColorDepth(jDistrib.graph.colors.start_depth)},hover=function(t){displayTooltip(t)},click=function(t){jQuery(jDistrib.pg_selector.sunburst).trigger("jd.displayDetails",[t])},dblclick=function(t){walkTo(t)};Object.deepExtend=function(t,e){for(var r in e)"object"==typeof e[r]&&null!==e[r]?(t[r]=t[r]||{},arguments.callee(t[r],e[r])):t[r]=e[r];return t};var getStartAngle=function(t){return Math.max(0,Math.min(2*Math.PI,jDistrib.graph._x(t.x)))},getEndAngle=function(t){return Math.max(0,Math.min(2*Math.PI,jDistrib.graph._x(t.x+t.dx)))},getInnerRadius=function(t){return Math.max(0,t.y?jDistrib.graph._y(t.y):t.y)},getOuterRadius=function(t){return Math.max(0,jDistrib.graph._y(t.y+t.dy))},stash=function(t){t.x0=t.x,t.dx0=t.dx},brancheSizes=function(t){var e=new Array,r=t;for(e.unshift({name:r.name,size:getSize(r),node:r});r.hasOwnProperty("parent")&&null!=r.parent;)r=r.parent,e.unshift({name:r.name,size:getSize(r),node:r});return e},sunburstUpdate=function(t,e){e=null==e?1e3:e,removeLabels(),d3.selectAll(jDistrib.pg_selector.sunburst+" path").transition().duration(e).attrTween("d",arcTweenZoom(t)),setTimeout(function(){addLabels()},e)},walkTo=function(t,e){jQuery(jDistrib.pg_selector.sunburst).trigger("jd.walk",[t]),jDistrib.tree.current_root=t,sunburstUpdate(t,e)},arcTweenData=function(t,e){function r(e){var r=i(e);return t.x0=r.x,t.dx0=r.dx,jDistrib.graph._arc(r)}var i=d3.interpolate({x:t.x0,dx:t.dx0},t);if(0==e){var n=d3.interpolate(x.domain(),[jDistrib.tree.current_root.x,jDistrib.tree.current_root.x+jDistrib.tree.current_root.dx]);return function(t){return x.domain(n(t)),r(t)}}return r},arcTweenZoom=function(t){var e=d3.interpolate(jDistrib.graph._x.domain(),[t.x,t.x+t.dx]),r=d3.interpolate(jDistrib.graph._y.domain(),[t.y,1]),i=d3.interpolate(jDistrib.graph._y.range(),[t.y?20:0,jDistrib.graph._radius]);return function(t,n){return n?function(){return jDistrib.graph._arc(t)}:function(n){return jDistrib.graph._x.domain(e(n)),jDistrib.graph._y.domain(r(n)).range(i(n)),jDistrib.graph._arc(t)}}},colorComponentToHexa=function(t){var e=t.toString(16);return e.length<2&&(e="0"+e),e},RGBToHexa=function(t,e,r){return colorComponentToHexa(t)+colorComponentToHexa(e)+colorComponentToHexa(r)},hexa2RGB=function(t){return[parseInt(t.substring(0,2),16),parseInt(t.substring(2,4),16),parseInt(t.substring(4,6),16)]},colorToWhite=function(t,e){var r=new Array;if(0===t.indexOf("#"))r=hexa2RGB(t.substr(1));else if(0===t.indexOf("rgb(")){r=t.substr(4,t.length-1).split(",");for(var i=0;3>i;i++)r[i]=parseInt(r[i])}for(var n="#",i=0;3>i;i++)n+=colorComponentToHexa(Math.min(255,r[i]+e));return n},getNodeByDepthSorted=function(t,e){var r=new Array;if(t.depth==e)r.push(t);else if(t.depth<e&&t.hasOwnProperty("children")&&0!=t.children.length)for(var i=t.children.sort(function(t,e){return getSize(e)-getSize(t)}),n=0;n<i.length;n++)for(var s=getNodeByDepth(i[n],e),a=0;a<s.length;a++)r.push(s[a]);return r},getColorsByFirstNodes=function(t){for(var e=getNodeByDepthSorted(t,t.depth+jDistrib.graph.colors.start_depth),r=new Array,i=0;i<e.length;i++)r["sb-arc-"+e[i].sunburst_id]=jDistrib.graph.colors.set[i%jDistrib.graph.colors.set.length];return r},getColorToApply=function(t,e){return t.depth<jDistrib.graph.colors.start_depth?jDistrib.graph.colors.neutral:t.depth==jDistrib.graph.colors.start_depth?e["sb-arc-"+t.sunburst_id]:colorToWhite(d3.select("#sb-arc-"+t.parent.sunburst_id).style("fill"),jDistrib.graph.colors.radialization)},getNodeByDepth=function(t,e){var r=new Array;if(t.depth==e)r.push(t);else if(t.depth<e&&t.hasOwnProperty("children")&&0!=t.children.length)for(var i=0;i<t.children.length;i++)for(var n=getNodeByDepth(t.children[i],e),s=0;s<n.length;s++)r.push(n[s]);return r},addDepth=function(t,e){if(t.depth=e,t.hasOwnProperty("children")&&0!=t.children.length)for(var r=0;r<t.children.length;r++)addDepth(t.children[r],e+1)},addID=function(t,e){if(e+=1,t.sunburst_id=e,t.hasOwnProperty("children")&&0!=t.children.length)for(var r=0;r<t.children.length;r++)e=addID(t.children[r],e);return e},getSize=function(t){if(t.hasOwnProperty("size"))return t.size;if(t.hasOwnProperty("children")&&0!=t.children.length){for(var e=0,r=0;r<t.children.length;r++)e+=getSize(t.children[r]);return e}},getRoot=function(t){for(var e=t;e.hasOwnProperty("parent")&&null!=e.parent;)e=e.parent;return e},addLabels=function(){0!=jDistrib.tree.current_root.depth&&d3.select(jDistrib.pg_selector.sunburst+" g").append("text").text(jDistrib.tree.current_root.depth).attr("class","jDistrib-root-label").attr("text-anchor","middle").attr("x",0).attr("y",0).on("dblclick",function(){walkTo(jDistrib.tree.current_root.parent)}),d3.selectAll(jDistrib.pg_selector.sunburst+" path").each(function(t){if(t==jDistrib.tree.current_root||isChildOf(t,jDistrib.tree.current_root)){var e=getEndAngle(t)-getStartAngle(t),r=getInnerRadius(t),i=Math.sin(e/2)*r*2,n=getOuterRadius(t)-r,s=r+(getOuterRadius(t)-r)/2,a=s*e;a>=n?setLabelArcMode(t,a,n):setLabelLineMode(t,n,i,r,e)}})},setLabelArcMode=function(t,e,r){if(r>=jDistrib.graph.labels.font_size){var i=d3.select(jDistrib.pg_selector.sunburst+" g"),n=t.name;"root"==t.name&&(n=""),i.append("text").text(n).attr("id","evaluate-size").attr("white-space","nowrap").attr("visibility","hidden").style("font-size",jDistrib.graph.labels.font_size+"px");var s=d3.select("#evaluate-size")[0][0].getBBox().width+jDistrib.graph.labels.padding;if(jDistrib.graph.labels.padding>e-3)n="";else for(;s>e-3;)n=n.substring(0,n.length-1),d3.select("#evaluate-size").text(n),s=d3.select("#evaluate-size")[0][0].getBBox().width+jDistrib.graph.labels.padding;d3.select("#evaluate-size").remove(),0!=n.length&&n.length<t.name.length&&(n=n.length>1?n.substring(0,n.length-1)+".":""),n.length>0&&i.append("text").attr("class","jDistrib-arc-label").attr("dy",(getOuterRadius(t)-getInnerRadius(t))/2).style("font-size",jDistrib.graph.labels.font_size+"px").attr("text-rendering","optimizeLegibility").append("textPath").attr("xlink:href",function(){return"#sb-arc-"+t.sunburst_id}).attr("startOffset",jDistrib.graph.labels.padding).text(function(){return n}).on("click",function(){click(t)}).on("dblclick",function(){walkTo(t)}).on("mousemove",function(){displayTooltip(t)}).on("mouseout",function(){hideTooltip()})}},setLabelLineMode=function(t,e,r,i,n){var s=d3.select(jDistrib.pg_selector.sunburst+" g"),a=!1;if(n>=Math.PI&&2*i>jDistrib.graph.labels.font_size?a=!0:r>jDistrib.graph.labels.font_size&&(a=!0),a){var l=t.name;if("root"==t.name&&(l=""),t.hasOwnProperty("children")&&0!=t.children.length){s.append("text").text(l).attr("id","evaluate-size").attr("white-space","nowrap").attr("visibility","hidden").style("font-size",jDistrib.graph.labels.font_size+"px");var o=d3.select("#evaluate-size")[0][0].getBBox().width+jDistrib.graph.labels.padding;if(jDistrib.graph.labels.padding>e-3)l="";else for(;o>e-3;)l=l.substring(0,l.length-1),d3.select("#evaluate-size").text(l),o=d3.select("#evaluate-size")[0][0].getBBox().width+jDistrib.graph.labels.padding;d3.select("#evaluate-size").remove(),0!=l.length&&l.length<t.name.length&&(l=l.length>1?l.substring(0,l.length-1)+".":"")}l.length>0&&s.append("text").text(function(){return l}).attr("class","jDistrib-arc-label").style("font-size",jDistrib.graph.labels.font_size+"px").attr("dy",".35em").attr("text-anchor",function(){return jDistrib.graph._x(t.x+t.dx/2)>Math.PI?"end":"start"}).attr("transform",function(){var e=180*jDistrib.graph._x(t.x+t.dx/2)/Math.PI-90;return"rotate("+e+")translate("+(jDistrib.graph._y(t.y)+jDistrib.graph.labels.padding)+")rotate("+(e>90?-180:0)+")"}).on("click",function(){click(t)}).on("dblclick",function(){walkTo(t)}).on("mousemove",function(){displayTooltip(t)}).on("mouseout",function(){hideTooltip()})}},removeLabels=function(){d3.selectAll(jDistrib.pg_selector.sunburst+" .jDistrib-arc-label").remove(),d3.selectAll(jDistrib.pg_selector.sunburst+" .jDistrib-root-label").remove()},isChildOf=function(t,e){return t.depth<=e.depth?!1:t.depth-1==e.depth?t.parent==e:isChildOf(t.parent,e)},hideTooltip=function(){jDistrib.access.tooltip.transition().duration(500).style("opacity",0)},displayTooltip=function(t){jDistrib.access.tooltip.html(getTooltipContent(t)).style("left",d3.event.layerX+5+"px").style("top",d3.event.layerY-30+"px"),jDistrib.access.tooltip.transition().duration(200).style("opacity",.9)},getTooltipContent=function(t){return 0==jDistrib.tree.current_root.depth?t.name+": <b>"+(getSize(t)/jDistrib.tree.root_size*100).toFixed(3)+"%</b>":t.name+":<br />Total <b>"+(getSize(t)/jDistrib.tree.root_size*100).toFixed(3)+"%</b><br />"+jDistrib.tree.current_root.name+" <b>"+(getSize(t)/getSize(jDistrib.tree.current_root)*100).toFixed(3)+"%</b>"},walkTraceUpdate=function(t){var e=brancheSizes(t),r=d3.select(jDistrib.pg_selector.walktrace);r.selectAll(".jDistrib-walk-path").remove();for(var i=r.append("div").attr("class","jDistrib-walk-path"),n=0;n<e.length;n++){var s=i.append("div").attr("class","jDistrib-walk-rank").attr("style","background-color:#ffbb78");s.append("span").attr("class","jDistrib-walk-rank-name").html(e[n].name),0!=n&&s.append("span").attr("class","jDistrib-walk-rank-size").html((parseInt(e[n].size)/parseInt(e[n-1].size)*100).toFixed(1)),s.data([e[n].node]),s.on("click",function(){walkTo(d3.select(this)[0][0].__data__)})}i.append("div").attr("style","clear:both")},_setMenu=function(){d3.select(jDistrib.pg_selector.menu).append("label").attr("for","in-label-size").text("Font size: "),d3.select(jDistrib.pg_selector.menu).append("input").attr("id","in-label-size").attr("type","number").attr("min",1).attr("value",jDistrib.graph.labels.font_size).on("change",function(){d3.select("#in-color-depth")[0][0].value<1&&(d3.select("#in-color-depth")[0][0].value=1),changeLabelSize(d3.select("#in-label-size")[0][0].value)});var t=7;d3.select(jDistrib.pg_selector.menu).append("label").attr("for","in-color-depth").text("Colors start depth: "),d3.select(jDistrib.pg_selector.menu).append("input").attr("id","in-color-depth").attr("type","number").attr("min",1).attr("max",t).attr("value",jDistrib.graph.colors.start_depth).on("change",function(){d3.select("#in-color-depth")[0][0].value<1?d3.select("#in-color-depth")[0][0].value=1:d3.select("#in-color-depth")[0][0].value>t&&(d3.select("#in-color-depth")[0][0].value=t),changeColorDepth(d3.select("#in-color-depth")[0][0].value)})},changeLabelSize=function(t){jDistrib.graph.labels.font_size=t,removeLabels(),addLabels()},changeColorDepth=function(t){jDistrib.graph.colors.start_depth=t;var e=getColorsByFirstNodes(getRoot(jDistrib.tree.current_root));d3.select(jDistrib.pg_selector.sunburst+" g").selectAll("path").style("fill",function(t){return getColorToApply(t,e)})},clearDetails=function(){d3.select(jDistrib.pg_selector.detail).html(""),d3.select(jDistrib.pg_selector.detail).append("div").attr("class","jDistrib-empty-details").text("Click on an element to see more details.")},displayDetails=function(t){for(var e=brancheSizes(t),r="",i=0;i<e.length;i++){var n="";n+="<td>"+e[i].name+"</td>",n+='<td class="number">'+e[i].size+"</td>",0!=i?(n+='<td class="number">'+(parseInt(e[i].size)/parseInt(e[0].size)*100).toFixed(3)+"</td>",n+='<td class="number">'+(parseInt(e[i].size)/parseInt(e[i-1].size)*100).toFixed(3)+"</td>"):(n+="<td></td>",n+="<td></td>"),r+="<tr>"+n+"</tr>"}d3.select(jDistrib.pg_selector.detail).html('<table class="jDistrib-table-details"> <thead> <tr> <th>Name</th> <th>Size</th> <th>Global %</th> <th>Parent %</th> </tr> </thead> <tbody>'+r+"</tbody></table><p>"+t.name+" nb children: "+(void 0==t.children?0:t.children.length)+"</p>")},exportSVG=function(){console.log("export"),d3.select(jDistrib.pg_selector.sunburst+" .jDistrib-data-export").empty()&&d3.select(jDistrib.pg_selector.sunburst).append("a").attr("class","jDistrib-data-export").attr("href","").attr("download","").attr("style","display:none;");var t=d3.select(jDistrib.pg_selector.sunburst+" svg");console.log(t[0][0]),xml=(new XMLSerializer).serializeToString(t[0][0]),svg_data="data:application/octet-stream;base64,"+btoa(xml),d3.select(jDistrib.pg_selector.sunburst+" .jDistrib-data-export").attr("href",svg_data).attr("download","jDistribChart.svg"),jQuery(jDistrib.pg_selector.sunburst+" .jDistrib-data-export")[0].click()};
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129 </script>
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130 <script type="text/javascript">
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131 /*
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132 * ExtendedNode 1.0.0 - JavaScript ExtendedNode Library
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133 *
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134 * Copyright (c) 2015 INRA
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135 *
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136 * @author: Escudié Frédéric
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137 * @license: MIT (http://www.opensource.org/licenses/mit-license.php) license.
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138 */
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139 var ExtendedNode=function(e,t,n,r){if(this.name=e,this.parent=t,this.children=new Array,null!=n)for(var a=0;a<n.length;a++)this.addChild(n[a]);this.metadata=new Array,null!=r&&(this.metadata=r)};ExtendedNode.prototype.hasChild=function(e){if(null==e)return this.children.length>0;for(var t=!1,n=0;n<this.children.length&&!t;n++)e==this.children[n]&&(t=!0);return t},ExtendedNode.prototype.getChild=function(e){if(!this.hasChild(e))throw this.name+" doesn't have child named '"+e+"'.";return this.children[e]},ExtendedNode.prototype.getParent=function(){return this.parent},ExtendedNode.prototype.getNodeByDepth=function(e){var t=new Array;if(0==e)t.push(this);else if(this.hasChild())for(var n=0;n<this.children.length;n++)for(var r=this.children[n].getNodeByDepth(e-1),a=0;a<r.length;a++)t.push(r[a]);return t},ExtendedNode.prototype.addChild=function(e){null==e.parent&&(e.parent=this),this.children.push(e)},ExtendedNode.fromNewick=function(e){for(var t=new Array,n=0;n<e.length;n++){var r=e[n];if("("==r)t.push("(");else if(")"==r){for(var a=new ExtendedNode(null,null,null,null);"("!=t[t.length-1];)a.addChild(t.pop());t.pop(),t.push(a)}else if(","==r);else if(";"==r);else if(" "==r);else if(":"==r)if("{"==e[n+1]){for(metadata_json="{",n++,nb_open=1,nb_closed=0;nb_open!=nb_closed;)n++,metadata_json+=e[n],"{"==e[n]?nb_open++:"}"==e[n]&&nb_closed++;t[t.length-1].metadata=JSON.parse(metadata_json)}else{for(var h="";","!=e[n+1]&&")"!=e[n+1]&&";"!=e[n+1];)n++,h+=e[n];t[t.length-1].metadata.dist=h}else{var i=null;0!=n&&(i=e[n-1]),'"'==r?(stop_markers=['"'],n++):stop_markers=[",",")",":",";"];for(var d=e[n];-1==stop_markers.indexOf(e[n+1]);)n++,d+=e[n];if(-1!=stop_markers.indexOf('"')&&n++,")"==i)t[t.length-1].name=d;else{var l=new ExtendedNode(d,null,null,null);t.push(l)}}}return t[0]},ExtendedNode.prototype.keepOnlySamples=function(e){var t=!1;if(this.hasChild()){for(var n=new Array,r=0;r<this.children.length;r++)this.children[r].keepOnlySamples(e)&&n.push(r);for(var a=0,h=0;h<n.length;h++)this.children.splice(n[h]-a,1),a++;0==this.children.length&&(t=!0)}else{for(var i=!1,d={},l=0;l<e.length;l++)this.metadata.hasOwnProperty(e[l])&&(d[e[l]]=this.metadata[e[l]],i=!0);i?this.metadata=d:t=!0}return t},ExtendedNode.prototype.toJson=function(){var e={name:null!=this.name?this.name:"",metadata:this.metadata};if(this.hasChild()){for(var t=new Array,n=0;n<this.children.length;n++)t.push(this.children[n].toJson());e.children=t}var r=Object.keys(this.metadata);if(0!=r.length){for(var a=0,h=0;h<r.length;h++)a+=this.metadata[r[h]];e.size=a}return e};
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140 </script>
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141 <script type="text/javascript">
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142 /*
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143 * HTMLTable.js 0.1.0 - HTMLTable Library
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144 *
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145 * Copyright (c) 2015 Escudie Frederic
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146 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
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147 */
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148 function HTMLtable(e){var t,r,n=e,a=";";this.deleteColumns=function(e){for(var a=n.getElementsByTagName("tr"),o=0;o<a.length;o++){s=0;var i=a[o].getElementsByTagName("td");0==i.length&&(i=a[o].getElementsByTagName("th"));for(var v=0,s=0;s<t[1];s++)if(!r[o][s]){var f=i[v].getAttribute("colspan");if(null!=f)for(var m=0;f>m;m++){if(in_array(s+m,e)){var u=i[v].getAttribute("colspan");u-1==0?i[v].removeAttribute("colspan"):i[v].setAttribute("colspan",u-1)}if(null==i[v].getAttribute("colspan")){var h=i[v];a[o].removeChild(h),v--}}else if(in_array(s,e)){var h=i[v];a[o].removeChild(h),v--}v++}}l(),g()},this.filter=function(e,a){var l=new RegExp(e),g=new Array;null!=a&&a||(g.c0=!0);for(var o=n.getElementsByTagName("tr"),i=0;i<o.length;i++){f=0;var v=o[i].getElementsByTagName("td");if(0!=v.length)for(var s=0,f=0;f<t[1];f++)r[i][f]||(l.test(v[s].innerHTML)&&(g["c"+f]=!0),s++)}for(var m=new Array,u=0;u<t[1];u++)void 0===g["c"+u]&&m.push(u);this.deleteColumns(m)},this.getModel=function(){return n};var l=function(){for(var e=0,r=0,a=n.getElementsByTagName("tr"),l=0;l<a.length;l++){var g=0;e++;var o=a[l].getElementsByTagName("td");0==o.length&&(o=a[l].getElementsByTagName("th"));for(var i=0;i<o.length;i++){var v=o[i].getAttribute("colspan");g+=null==v?1:parseInt(v)}g>r&&(r=g)}t=new Array(2),t[0]=e,t[1]=r},g=function(){r=new Array(t[0]);for(var e=0;e<t[0];e++){r[e]=new Array(t[1]);for(var a=0;a<t[1];a++)r[e][a]=!1}for(var l=n.getElementsByTagName("tr"),g=0;g<l.length;g++){v=0;var o=l[g].getElementsByTagName("td");0==o.length&&(o=l[g].getElementsByTagName("th"));for(var i=0,v=0;v<t[1];v++)if(!r[g][v]){var s=0,f=0,m=o[i].getAttribute("rowspan");null!=m&&(s=parseInt(m)-1);var u=o[i].getAttribute("colspan");null!=u&&(f=parseInt(u)-1);for(var h=s;h>=0;h--)for(var y=f;y>=0;y--)(0!=h||0!=y)&&(r[g+h][v+y]=!0);i++}}};this.replace=function(e,a,l){var g=new RegExp(e);null==a&&(a=""),null==l&&(l="");for(var o=n.getElementsByTagName("tr"),i=0;i<o.length;i++){f=0;var v=o[i].getElementsByTagName("td");if(0!=v.length)for(var s=0,f=0;f<t[1];f++)if(!r[i][f]){var m=g.exec(v[s].innerHTML);null!=m&&(void 0===m[1]&&(m[1]=""),v[s].innerHTML=a+m[1]+l),s++}}},this.toCSV=function(){for(var e="",l=n.getElementsByTagName("tr"),g=0;g<l.length;g++){var o=l[g].getElementsByTagName("td");0==o.length&&(o=l[g].getElementsByTagName("th"));for(var i=0,v=0;v<t[1];v++)r[g][v]||(e+=o[i].innerHTML,i++),e+=a;e=e.substr(0,e.length-1)+"\n"}return e},l(),g()}var in_array=function(e,t){for(var r in t)if(t[r]==e)return!0;return!1};
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149
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150 /*
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151 * dataTableExtractor.plugin.js 0.1.0 - datatableExport Library
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152 *
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153 * Copyright (c) 2015 Escudie Frederic
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154 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
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155 */
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156 !function(t){t.fn.datatableExport=function(a){var e={anchor_id:t(this).attr("id"),table_id:null,csv_separator:";",omitted_columns:[]},n=t.extend(e,a);if(!t(this).length)throw"The element where the datatableExport is called does not exist.";if(void 0==n.anchor_id)throw"The datatableExport plugin must be called on an element with id.";if(null==n.table_id)throw"You must set the table_id parameter in datatableExport plugin.";if(!t("#"+n.table_id))throw"The datatable '#"+n.table_id+"' cannot be retieve in DOM.";return this.each(function(){var a=t(this);a.on("click",function(){t.fn.datatableExport.csv(n.anchor_id,n.table_id,n.csv_separator,n.omitted_columns)})})},t.fn.datatableExport.cleanCellMarkup=function(a,e){t.parseHTML(e);t("#"+a).append('<div class="hidden data-tmp">'+e+"</div>"),t("#"+a+" .data-tmp").find("input").each(function(){var a="";a=t(this).is(":checkbox")?t(this).is(":checked")?"true":"false":t(this).val(),t(this).replaceWith(a)});var n=t("#"+a+" .data-tmp").text();return t("#"+a+" .data-tmp").remove(),n},t.fn.datatableExport.csv=function(a,e,n,i){var l="",r=t("#"+e).DataTable(),d=t("#"+e+" thead")[0],o=new HTMLtable(d.cloneNode(!0));o.deleteColumns(i),l+=o.toCSV();var c=r.rows().data();t.each(c,function(e,n){for(var r="",d=0;d<n.length;d++)-1==t.inArray(d,i)&&(r+='"'+t.fn.datatableExport.cleanCellMarkup(a,n[d])+'";');""!=r&&(r=r.slice(0,-1)),l+=r+"\n"}),t("#"+a+"-extract-csv").length||t("#"+a).append('<a id="'+a+'-extract-csv" href="data:text/csv;charset=UTF-8,'+encodeURI(l)+'" download="data.csv" style="display:none;"></a>'),t("#"+a+"-extract-csv")[0].click()}}(jQuery);
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157 </script>
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158
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159 <script type="text/javascript">
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160 /**
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161 * Returns the string representation of the number.
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162 * @param pValue {Float} The number to process.
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163 * @return {String} The string representation (example: 12856892.11111 => 12,856,892.11).
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164 */
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165 var numberDisplay = function( pValue ){
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166 var new_val = "" ;
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167 if( ("" + pValue + "").indexOf(".") != -1 ){
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168 new_val = pValue.toFixed(2).replace(/(\d)(?=(\d{3})+\b)/g, '$1,');
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169 } else {
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170 new_val = pValue.toFixed().replace(/(\d)(?=(\d{3})+\b)/g, '$1,');
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171 }
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172 return new_val ;
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173 }
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174
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175 /**
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176 * Returns hash use to init HightChart object (without 'type').
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177 * @param pTitle {String} The title of the chart.
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178 * @param pXTitle {String} The xAxis title.
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179 * @param pYTitle {String} The yAxis title.
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180 * @param pXCategories {Array} The title of each category (x scale labels).
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181 * @param pData {Array} The HightChart series.
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182 * @return {Hash} The hash.
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183 * @warning This method use HightChart xAxis.categories.
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184 */
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185 var chartplot = function( pTitle, pXTitle, pYTitle, pXCategories, pData ) {
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186 var chart = {
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187 title: {
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188 text: pTitle
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189 },
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190 xAxis: {},
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191 yAxis: {
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192 title: {
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193 text: pYTitle
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194 }
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195 },
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196 series: pData,
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197 credits: {
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198 enabled: false
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199 }
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200 }
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201 if( pXCategories != null ){
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202 chart['xAxis']['categories'] = pXCategories ;
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203 }
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204 if( pXTitle != null ){
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205 chart['xAxis']['title'] = { text: pXTitle } ;
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206 }
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207 if( pData.length <= 1 ) {
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208 chart['legend'] = {'enabled': false};
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209 } else {
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210 chart['legend'] = {'enabled': true};
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211 }
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212 return chart ;
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213 }
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214
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215 /**
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216 * Returns hash use to init HightChart line.
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217 * @param pTitle {String} The title of the chart.
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218 * @param pXTitle {String} The xAxis title.
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219 * @param pYTitle {String} The yAxis title.
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220 * @param pXCategories {Array} x scale labels.
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221 * @param pData {Array} The HightChart series.
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222 * @return {Hash} Parameters to use in Highchart's constructor.
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223 */
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224 var lineplot_param = function(pTitle, pXTitle, pYTitle, pXCategories, pData) {
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225 var chart = chartplot( pTitle, pXTitle, pYTitle, pXCategories, pData );
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226 chart['chart'] = {
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227 type: 'line',
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228 zoomType: 'x'
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229 };
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230 chart['yAxis']['min'] = 0 ;
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231 chart['legend'] = {'enabled': true};
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232 chart['plotOptions'] = {
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233 area: {
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234 marker: {
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235 enabled: true,
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236 symbol: 'circle',radius:4,
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237 }
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238 }
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239 };
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240 return chart ;
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241 }
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242
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243 /**
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244 * Returns hash use to init HightChart column.
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245 * @param pTitle {String} The title of the chart.
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246 * @param pYTitle {String} The yAxis title.
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247 * @param pCategories {Array} x scale labels.
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248 * @param pSeries {Array} The HightChart series.
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249 * @param unity {String} Unity used in tooltip.
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250 * @return {Hash} Parameters to use in Highchart's constructor.
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251 */
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252 var barplot_param = function( pTitle, pYTitle, pCategories, pSeries, unity ) {
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253 return {
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254 chart: {
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255 type: 'column',
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256 zoomType: 'y'
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257 },
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258 title: {
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259 text: pTitle
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260 },
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261 xAxis: {
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262 categories: pCategories,
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263 crosshair: true
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264 },
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265 yAxis: {
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266 min: 0,
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267 title: {
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268 text: pYTitle
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269 }
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270 },
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271 tooltip: {
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272 headerFormat: '<span style="font-size:10px">{point.key}</span><table>',
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273 pointFormat: '<tr><td style="color:{series.color};padding:0">{series.name}: </td>' +
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274 '<td style="padding:0"><b>{point.y} ' + unity + '</b></td></tr>',
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275 footerFormat: '</table>',
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276 shared: true,
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277 useHTML: true
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278 },
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279 plotOptions: {
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280 column: {
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281 pointPadding: 0.2,
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282 borderWidth: 0
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283 }
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284 },
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285 credits: {
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286 enabled: false
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287 },
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288 series: pSeries
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289 };
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290 }
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291
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292 /**
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293 * Returns the list of human readable intervals from The list of right threshold.
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294 * @param categories {Array} The list of right threshold.
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295 * @return {Hash} The formatted hash.
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296 * @example: [ 50, 60, 70 ] => [ "[0% - 50%[", "[50% - 60%[", "[60% - 70%[", "[70]" ]
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297 */
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298 var get_displayed_categories = function( categories ){
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299 displayed_categories = new Array();
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300 var prev = 0 ;
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301 for( var idx = 0 ; idx < categories.length ; idx++ ){
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302 if( idx != (categories.length - 1) ){
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303 displayed_categories.push( "[" + prev + "% - " + categories[idx] + "%[" );
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304 } else {
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305 if( prev != (categories[idx] - 1) ){
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306 displayed_categories.push( "[" + prev + "% - " + (categories[idx] - 1) + "%[" );
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307 } else {
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308 displayed_categories.push( "[" + prev + "%]" );
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309 }
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310 }
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311 prev = categories[idx] ;
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312 }
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313 return displayed_categories ;
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314 }
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315
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316 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
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317 //
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318 // Nav templates
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319 //
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320 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
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321 /**
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322 * Returns from alignment data an hash formatted to use in heatmap series.
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323 * @param categories_ident {Array} The list of right threshold for each x category in heatmap.
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324 * @param categories_cover {Array} The list of right threshold for each y category in heatmap.
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325 * @param data_type {String} The type of count ('seq' or 'clstr') [default: clstr].
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326 * @return {Hash} The formatted hash.
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327 */
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328 var get_alignment_heatmap_data = function( categories_ident, categories_cover, data_type ){
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329 var heatmap_data = new Array();
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330
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331 // Data sum by categories
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332 var scores_by_category = new Array();
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333 for( var data_idx = 0 ; data_idx < alignment_scores.length ; data_idx++ ){
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334 ident_idx = 0 ;
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335 while( alignment_scores[data_idx][0] >= categories_ident[ident_idx] ){
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336 ident_idx++ ;
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337 }
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338 cover_idx = 0 ;
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339 while( alignment_scores[data_idx][1] >= categories_cover[cover_idx] ){
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340 cover_idx++ ;
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341 }
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342 if( !scores_by_category.hasOwnProperty(ident_idx) ){
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343 scores_by_category[ident_idx] = new Array();
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344 }
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345 if( !scores_by_category[ident_idx].hasOwnProperty(cover_idx) ){
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346 scores_by_category[ident_idx][cover_idx] = 0 ;
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347 }
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348 scores_by_category[ident_idx][cover_idx] += alignment_scores[data_idx][2][data_type] ;
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349 }
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350
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351 // Data to heatmap data format
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352 for( var ident_idx = 0 ; ident_idx < categories_ident.length ; ident_idx++ ){
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353 for( var cover_idx = 0 ; cover_idx < categories_cover.length ; cover_idx++ ){
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354 if( scores_by_category.hasOwnProperty(ident_idx) && scores_by_category[ident_idx].hasOwnProperty(cover_idx) ){
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355 heatmap_data.push([
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356 ident_idx,
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357 cover_idx,
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358 scores_by_category[ident_idx][cover_idx]
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359 ]);
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360 } else {
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361 heatmap_data.push([
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362 ident_idx,
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363 cover_idx,
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364 ""
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365 ]);
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366 }
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367 }
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368 }
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369
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370 return heatmap_data ;
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371 }
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372
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373 /**
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374 * Returns hash use to init an HightChart heatmap with alignment distribution.
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375 * @param data_type {String} The type of count ('seq' or 'clstr') [default: clstr].
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376 * @return {Hash} The hash.
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377 */
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378 var alignment_param = function( data_type ){
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379 if( data_type == null ){ data_type = "clstr" ; }
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380
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381 // Parameters
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382 var clean_type = {
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383 "clstr": "OTUs",
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384 "seq": "sequences"
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385 }
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386 var categories_ident = [1, 50, 80, 90, 95, 99, 100, 101];
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387 var categories_cover = [1, 50, 80, 90, 95, 99, 100, 101];
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388
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389 // Chart
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390 var chart = {
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391 chart: {
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392 type: 'heatmap'
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393 },
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394 title: {
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395 text: 'Number of ' + clean_type[data_type] + ' among their alignment results'
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396 },
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397 xAxis: {
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398 categories: get_displayed_categories(categories_ident),
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399 title: {text: 'Identity'},
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400 },
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401 yAxis: {
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402 categories: get_displayed_categories(categories_cover),
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403 title: {text: 'Coverage'},
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404 },
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405 colorAxis: {
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406 min: 0,
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407 minColor: '#FFFFFF',
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408 maxColor: Highcharts.getOptions().colors[0]
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409 },
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410 legend: {
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411 align: 'right',
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412 layout: 'vertical',
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413 margin: 0,
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414 verticalAlign: 'top',
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415 y: 25,
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416 symbolHeight: 280
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417 },
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418 tooltip: {
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419 formatter: function () {
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420 return 'Identity: <b>' + this.series.xAxis.categories[this.point.x] + '</b><br>'
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421 + ' Coverage: <b>' + this.series.yAxis.categories[this.point.y] + '</b><br>'
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422 + ' Nb ' + clean_type[data_type] + ': <b>' + ((this.point.value == "") ? 0 : this.point.value) + '</b>' ;
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423 }
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424 },
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425 credits: {enabled: false},
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426 exporting: {
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427 sourceHeight: 400,
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428 sourceWidth: 850
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429 },
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430 series: [{
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431 name: clean_type[data_type],
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432 borderWidth: 1,
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433 data: get_alignment_heatmap_data( categories_ident, categories_cover, data_type ),
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434 dataLabels: {
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435 enabled: true,
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436 color: '#000000'
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437 }
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438 }]
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439 };
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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440
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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441 return chart ;
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442 }
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443
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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444 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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445 * Returns from bootstrap data for one taxonomic rank an hash formatted to use in tag data in one barplot series.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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446 * @param bootstrap_categories {Array} The list of right threshold for each x category in barplot.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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447 * @param scores {Hash} The bootstrap data for one taxonomic rank.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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448 * @param data_type {String} The type of count ('seq' or 'clstr') [default: clstr].
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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449 * @return {Hash} The formatted hash.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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450 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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451 var get_bootstrap_barplot_data = function( bootstrap_categories, scores, data_type ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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452 var formated_data = new Array();
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453
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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454 // Data to hash by category
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455 var scores_by_xCategory = new Array();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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456 for( var bootstrap in scores ){
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457 bootstrap_idx = 0 ;
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458 while( bootstrap >= bootstrap_categories[bootstrap_idx] ){
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459 bootstrap_idx++ ;
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460 }
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461 if( !scores_by_xCategory.hasOwnProperty(bootstrap_idx) ){
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462 scores_by_xCategory[bootstrap_idx] = 0 ;
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463 }
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464 scores_by_xCategory[bootstrap_idx] += scores[bootstrap][data_type] ;
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465 }
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466
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467 // Data to series data format
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468 for( var bootstrap_idx = 0 ; bootstrap_idx < bootstrap_categories.length ; bootstrap_idx++ ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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469 if( scores_by_xCategory.hasOwnProperty(bootstrap_idx) ){
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470 formated_data.push( scores_by_xCategory[bootstrap_idx] );
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471 } else {
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472 formated_data.push( 0 );
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473 }
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474 }
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475
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476 return formated_data ;
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477 }
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478
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479 /**
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480 * Returns hash use to init an HightChart barplot with bootstrap distribution.
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481 * @param data_type {String} The type of count ('seq' or 'clstr') [default: clstr].
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482 * @return {Hash} The hash.
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483 */
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484 var bootstrap_param = function( data_type ){
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485 if( data_type == null ){ data_type = "clstr" ; }
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486
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diff changeset
487 // Parameters
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488 var clean_type = {
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489 "clstr": "OTUs",
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490 "seq": "sequences"
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491 }
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492 var bootstrap_categories = [50, 80, 90, 95, 100, 101];
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493
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494 // Data
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495 var histogram_series = new Array();
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496 for( var taxonomic_rank in bootstrap_scores ){
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497 histogram_series.push({
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498 "name": taxonomic_rank,
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499 "data": get_bootstrap_barplot_data( bootstrap_categories, bootstrap_scores[taxonomic_rank], data_type ),
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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500 "index": taxonomic_ranks.indexOf( taxonomic_rank )
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501 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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502 }
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diff changeset
503
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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504 // Chart
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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505 return(
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506 barplot_param(
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507 'Number of ' + clean_type[data_type] + ' by bootstrap on affiliation',
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diff changeset
508 'Nb ' + clean_type[data_type],
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509 get_displayed_categories(bootstrap_categories),
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510 histogram_series,
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511 clean_type[data_type]
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512 )
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513 );
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514 }
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515
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516 /**
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517 * Add listener to update content of rarefaction-modal.
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518 */
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519 var add_rarefaction_listeners = function() {
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520 $('#rarefaction-modal').on('shown.bs.modal', function (e) { // Draw curves when modal is shown
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521 // Select data
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522 var selected_level = $('#rarefaction-level').val() ;
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523 var selected_series = new Array();
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524 $('input[id^="taxBySample-chk-"]').each( function(){
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525 if( $(this).is(':checked')){
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526 var selected_sample = $(this).prop('id').substring(16, $(this).prop('id').length) ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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527 var series_data = new Array([0, 0]); // Add the zero point to curve
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diff changeset
528 for( var sampling_idx = 0 ; sampling_idx < rarefaction[selected_sample][selected_level].length ; sampling_idx++ ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
529 series_data.push([
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
530 (sampling_idx+1)*rarefaction_step,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
531 rarefaction[selected_sample][selected_level][sampling_idx]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
532 ]);
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
533 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
534 selected_series.push({
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
535 'name': selected_sample,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
536 'data': series_data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
537 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
538 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
539 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
540 // Draw chart
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
541 $('#rarefaction-chart').highcharts( lineplot_param("Rarefaction curves", "Nb sampled sequences", "Nb " + selected_level, null, selected_series) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
542 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
543 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
544
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
545 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
546 * Add listener to update content of sunburst-modal.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
547 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
548 var add_sunburst_listeners = function() {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
549 $('#sunburst-modal').on('shown.bs.modal', function (event) { // Draw sunburst when modal is shown
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
550 // Clean previous chart
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
551 $('#sunburst-graph').empty() ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
552 $('#sunburst-walktrace').empty() ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
553 $('#sunburst-menu').empty() ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
554 $('#sunburst-detail').empty() ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
555
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
556 // Select data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
557 var tree = ExtendedNode.fromNewick( tree_distribution );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
558 if( event.relatedTarget.id == "display-spl-sunburst" ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
559 var selected_samples = new Array();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
560 $('input[id^="taxBySample-chk-"]').each( function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
561 if( $(this).is(':checked')){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
562 var sample_name = $(this).prop('id').substring(16, $(this).prop('id').length) ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
563 selected_samples.push( samples_names.indexOf(sample_name) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
564 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
565 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
566 tree.keepOnlySamples( selected_samples );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
567 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
568
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
569 // Draw chart
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
570 cJDistrib(
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
571 tree.toJson(),
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
572 {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
573 "pg_selector": {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
574 "sunburst": "#sunburst-graph",
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
575 "walktrace": "#sunburst-walktrace",
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
576 "menu": "#sunburst-menu",
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
577 "detail": "#sunburst-detail"
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
578 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
579 "graph": {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
580 "sunburst": {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
581 "width": Math.min($("#sunburst-graph").width(), $(window).height()),
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
582 "height": Math.min($("#sunburst-graph").width(), $(window).height()),
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
583 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
584 "colors": {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
585 "start_depth": 2
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
586 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
587 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
588 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
589 );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
590
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
591 // Center sunburst
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
592 $("#sunburst-graph").width( Math.min($("#sunburst-graph").width(), $(window).height()) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
593 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
594 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
595
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
596 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
597 * disable/enable buttons in "taxonomy distribution" datatable.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
598 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
599 var updateTaxButtonState = function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
600 $("#display-rarefaction").removeClass( "disabled" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
601 $("#display-spl-sunburst").removeClass( "disabled" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
602 if( $('input[id^="taxBySample-chk-"]:checked').length == 0 ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
603 $("#display-rarefaction").addClass( "disabled" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
604 $("#display-spl-sunburst").addClass( "disabled" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
605 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
606 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
607
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
608 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
609 * Loads content of "taxonomy distribution" nav.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
610 * @param cotainer_id {String} The ID of the content where the information will be added.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
611 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
612 var taxBySample_load = function( container_id ) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
613 // Table titles
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
614 var titles = [ '<input id="taxBySample-check-all" type="checkbox" value="1">', "Samples" ];
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
615 for( var rank = 0 ; rank < taxonomic_ranks.length ; rank++ ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
616 titles.push( "Nb " + taxonomic_ranks[rank].toLowerCase() );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
617 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
618 titles.push( "Nb sequences" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
619 $('#taxBySample-table thead').append( '<tr><th>' + titles.join("</th><th>") + '</th></tr>' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
620 $('#taxBySample-table .title').attr( "colspan", titles.length );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
621 $('#taxBySample-table tfoot th').each(function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
622 $(this).attr( "colspan", titles.length );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
623 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
624
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
625 // Table data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
626 for( var sample_idx = 0 ; sample_idx < samples_names.length ; sample_idx++ ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
627 var sample_name = samples_names[sample_idx] ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
628 var tree = ExtendedNode.fromNewick( tree_distribution );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
629 tree.keepOnlySamples( [sample_idx] );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
630 var sample_data = [ '<input id="taxBySample-chk-' + sample_name + '" type="checkbox" value="1">', sample_name ];
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
631 for( var rank = 0 ; rank < taxonomic_ranks.length ; rank++ ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
632 sample_data.push( numberDisplay(tree.getNodeByDepth(rank+1).length) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
633 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
634 sample_data.push( numberDisplay(rarefaction[sample_name]['nb_seq']) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
635 // Add row data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
636 $('#taxBySample-table tbody').append( '<tr><td>' + sample_data.join("</td><td>") + '</td></tr>' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
637 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
638
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
639 // Buttons enable/disable management
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
640 $('input[id^="taxBySample-check-all"]').on( 'change', updateTaxButtonState );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
641 $('input[id^="taxBySample-chk-"]').on( 'change', updateTaxButtonState );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
642
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
643 // Check all management
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
644 $('#taxBySample-check-all').on('click', function (e) { // Manage check all
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
645 if( $(this).is(':checked') ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
646 $('input[id^="taxBySample-chk-"]').each( function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
647 $(this).prop( 'checked', true );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
648 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
649 } else {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
650 $('input[id^="taxBySample-chk-"]').each( function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
651 $(this).prop( 'checked', false );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
652 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
653 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
654 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
655 $('input[id^="taxBySample-chk-"]').on('change', function (e) { // Uncheck select all when uncheck one sample
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
656 if( !$(this).is(':checked') && $('#taxBySample-check-all').is(':checked') ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
657 $('#taxBySample-check-all').prop( 'checked', false );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
658 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
659 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
660
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
661 // Datatable
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
662 $('#taxBySample-table').DataTable({
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
663 "sDom": '<"top"<"#taxBySample-csv-export"><"clear">lf>rt<"bottom"ip><"clear">',
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
664 'order': [[1, 'asc']],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
665 'columnDefs': [{
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
666 'targets': [0],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
667 'orderable': false
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
668 }],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
669 "fnDrawCallback": updateTaxButtonState
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
670 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
671 // Datatable export
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
672 $('#taxBySample-csv-export').addClass( 'dataTables_filter' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
673 $('#taxBySample-csv-export').html( '<button class="btn btn-primary"><span class="glyphicon glyphicon-open-file" aria-hidden="true">CSV</span></button>' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
674 $('#taxBySample-csv-export').datatableExport({
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
675 'table_id': "taxBySample-table",
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
676 'omitted_columns': [0]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
677 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
678
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
679 // Rarefaction select options
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
680 var select_lvl_options = "" ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
681 $.each( rarefaction_ranks, function( idx, level ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
682 if( level != "nb_seq" ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
683 select_lvl_options += '<option value="' + level + '">' + level.charAt(0).toUpperCase() + level.slice(1) + '</option>'
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
684 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
685 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
686 $('#rarefaction-level').html( select_lvl_options );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
687
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
688 // Add listeners
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
689 add_sunburst_listeners() ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
690 add_rarefaction_listeners() ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
691 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
692
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
693 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
694 * Loads content of "alignment distribution" nav.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
695 * @param cotainer_id {String} The ID of the content where the information will be added.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
696 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
697 var alignment_score_load = function( cotainer_id ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
698 $('#' + cotainer_id).highcharts( alignment_param() );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
699
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
700 $('#heatmap-clstr-btn').on('click', function (e) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
701 if( $('#heatmap-clstr-btn').hasClass("btn-default") ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
702 $('#heatmap-clstr-btn').removeClass( "btn-default" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
703 $('#heatmap-clstr-btn').addClass( "btn-primary" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
704 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
705 if( $('#heatmap-seq-btn').hasClass("btn-primary") ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
706 $('#heatmap-seq-btn').removeClass( "btn-primary" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
707 $('#heatmap-seq-btn').addClass( "btn-default" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
708 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
709 $('#' + cotainer_id).highcharts( alignment_param("clstr") );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
710 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
711
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
712 $('#heatmap-seq-btn').on('click', function (e) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
713 if( $('#heatmap-seq-btn').hasClass("btn-default") ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
714 $('#heatmap-seq-btn').removeClass( "btn-default" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
715 $('#heatmap-seq-btn').addClass( "btn-primary" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
716 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
717 if( $('#heatmap-clstr-btn').hasClass("btn-primary") ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
718 $('#heatmap-clstr-btn').removeClass( "btn-primary" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
719 $('#heatmap-clstr-btn').addClass( "btn-default" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
720 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
721 $('#' + cotainer_id).highcharts( alignment_param("seq") );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
722 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
723 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
724
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
725 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
726 * Loads content of "bootstrap distribution" nav.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
727 * @param cotainer_id {String} The ID of the content where the information will be added.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
728 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
729 var bootstrap_score_load = function( cotainer_id ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
730 $('#' + cotainer_id).highcharts( bootstrap_param() );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
731
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
732 $('#bootstrap-clstr-btn').on('click', function (e) { // Display view by OTUs
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
733 if( $('#bootstrap-clstr-btn').hasClass("btn-default") ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
734 $('#bootstrap-clstr-btn').removeClass( "btn-default" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
735 $('#bootstrap-clstr-btn').addClass( "btn-primary" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
736 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
737 if( $('#bootstrap-seq-btn').hasClass("btn-primary") ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
738 $('#bootstrap-seq-btn').removeClass( "btn-primary" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
739 $('#bootstrap-seq-btn').addClass( "btn-default" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
740 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
741 $('#' + cotainer_id).highcharts( bootstrap_param("clstr") );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
742 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
743
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
744 $('#bootstrap-seq-btn').on('click', function (e) { // Display view by sequences
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
745 if( $('#bootstrap-seq-btn').hasClass("btn-default") ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
746 $('#bootstrap-seq-btn').removeClass( "btn-default" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
747 $('#bootstrap-seq-btn').addClass( "btn-primary" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
748 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
749 if( $('#bootstrap-clstr-btn').hasClass("btn-primary") ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
750 $('#bootstrap-clstr-btn').removeClass( "btn-primary" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
751 $('#bootstrap-clstr-btn').addClass( "btn-default" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
752 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
753 $('#' + cotainer_id).highcharts( bootstrap_param("seq") );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
754 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
755 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
756
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
757
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
758
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
759 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
760 //
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
761 // Data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
762 //
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
763 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
764 var taxonomic_ranks = ["Domain", "Phylum", "Class", "Order", "Family", "Genus", "Species"] ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
765 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
766 ["Domain", "Phylum", "Class", "Order", "Family", "Genus", "Species"]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
767 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
768 var samples_names = ["splA_01", "splA_02", "splA_03"] ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
769 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
770 ["Surface-01", "Surface-02", "Surface-03", "Middle-01", "Middle-02", "Middle-03"]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
771 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
772 var tree_distribution = "(((((((\"Multi-affiliation\":{\"1\": 98, \"0\": 140, \"2\": 51},\"Iamia majanohamensis\":{\"1\": 80, \"0\": 101, \"2\": 42},\"bacterium Ellin5247\":{\"1\": 25, \"0\": 48, \"2\": 18})\"Iamia\")\"Iamiaceae\",((\"actinobacterium BGR 43\":{\"1\": 383, \"0\": 726, \"2\": 267},\"actinobacterium YJF2-33\":{\"1\": 677, \"0\": 1236, \"2\": 433},\"bacterium enrichment culture clone auto73_4W\":{\"1\": 79, \"0\": 129, \"2\": 64},\"unknown species\":{\"1\": 3783, \"0\": 6071, \"2\": 2255},\"bacterium enrichment culture clone auto8_4W\":{\"1\": 448, \"0\": 704, \"2\": 266},\"Multi-affiliation\":{\"1\": 202, \"0\": 413, \"2\": 157})\"unknown genus\")\"unknown family\",((\"Multi-affiliation\":{\"1\": 304, \"0\": 611, \"2\": 196})\"Multi-affiliation\")\"Multi-affiliation\",((\"unknown species\":{\"1\": 47, \"0\": 77, \"2\": 32},\"Ferrimicrobium acidiphilum\":{\"1\": 295, \"0\": 697, \"2\": 198})\"Ferrimicrobium\",(\"actinobacterium BGR 77\":{\"1\": 1143, \"0\": 2068, \"2\": 773},\"actinobacterium BGR 74\":{\"1\": 6, \"0\": 10, \"2\": 2},\"Multi-affiliation\":{\"1\": 4, \"0\": 5, \"2\": 1},\"unknown species\":{\"1\": 2, \"0\": 4, \"2\": 1})\"Ferrithrix\",(\"unknown species\":{\"1\": 359, \"0\": 679, \"2\": 242},\"bacterium enrichment culture clone B213(2011)\":{\"1\": 128, \"0\": 245, \"2\": 78},\"Multi-affiliation\":{\"1\": 2, \"0\": 4, \"2\": 1},\"marine metagenome\":{\"1\": 13, \"0\": 11, \"2\": 4})\"CL500-29 marine group\",(\"Multi-affiliation\":{\"1\": 138, \"0\": 258, \"2\": 103})\"Multi-affiliation\",(\"Ilumatobacter nonamiensis YM16-303\":{\"1\": 213, \"0\": 405, \"2\": 130},\"unknown species\":{\"1\": 1887, \"0\": 3276, \"2\": 1197},\"Multi-affiliation\":{\"1\": 23, \"0\": 46, \"2\": 14})\"unknown genus\",(\"unknown species\":{\"1\": 462, \"0\": 819, \"2\": 303})\"Acidimicrobium\")\"Acidimicrobiaceae\",((\"Aciditerrimonas ferrireducens\":{\"1\": 20, \"0\": 40, \"2\": 17},\"unknown species\":{\"1\": 33, \"0\": 55, \"2\": 18})\"Aciditerrimonas\")\"Acidimicrobiales Incertae Sedis\",((\"unidentified bacterium wb1_P06\":{\"1\": 4, \"0\": 11, \"2\": 4})\"unknown genus\")\"Sva0996 marine group\",((\"bacterium WH6-7\":{\"1\": 6417, \"0\": 11193, \"2\": 4076},\"unidentified bacterium wb1_J07\":{\"1\": 92, \"0\": 136, \"2\": 58},\"unknown species\":{\"1\": 33, \"0\": 48, \"2\": 18},\"unidentified bacterium wb1_G04\":{\"1\": 64, \"0\": 99, \"2\": 43},\"microbial mat metagenome\":{\"1\": 43, \"0\": 70, \"2\": 32})\"unknown genus\")\"OM1 clade\")\"Acidimicrobiales\")\"Acidimicrobiia\")\"Actinobacteria\")\"Bacteria\")\"root\"" ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
773 /* This string is in newick extended format. The metadata is the count by sample (each sample is referenced by is index position in "samples_names"). */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
774 var rarefaction = {"splA_01": {"nb_seq": 47633, "Genus": [12, 12, 12, 12, 12, 12, 12, 12, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13], "Species": [23, 28, 30, 30, 30, 31, 31, 31, 32, 32, 32, 33, 33, 33, 33, 33, 33, 33, 33, 33, 33, 33, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34], "Family": [7, 7, 7, 7, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8]}, "splA_02": {"nb_seq": 27088, "Genus": [11, 12, 12, 12, 12, 12, 12, 12, 12, 12, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13], "Species": [25, 28, 30, 30, 30, 30, 30, 30, 30, 30, 32, 32, 32, 33, 33, 33, 33, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34], "Family": [6, 7, 7, 7, 7, 7, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8]}, "splA_03": {"nb_seq": 17297, "Genus": [12, 12, 12, 12, 12, 12, 12, 12, 12, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13], "Species": [25, 26, 27, 28, 30, 30, 30, 32, 33, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34], "Family": [7, 7, 7, 7, 7, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8]}} ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
775 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
776 {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
777 "Surface-01": {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
778 "nb_seq": 7115,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
779 "Genus": [108, 164, 196, 226, 252, 252, 252],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
780 "Species": [108, 164, 196, 227, 253, 268, 287],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
781 "Family": [85, 119, 133, 146, 154, 163, 169]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
782 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
783 "Surface-02": {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
784 ...
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
785 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
786 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
787 var rarefaction_step = 494 ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
788 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
789 1000
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
790 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
791 var rarefaction_ranks = ["Family", "Genus", "Species"] ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
792 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
793 ["Family", "Genus", "Species"]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
794 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
795 var alignment_scores = [[0, 0, {"seq": 32982, "clstr": 733}], [88.5, 56.81818181818182, {"seq": 422, "clstr": 1}], [88.5, 57.360406091370564, {"seq": 10, "clstr": 1}], [88.5, 57.692307692307686, {"seq": 30, "clstr": 2}], [87.5, 55.072463768115945, {"seq": 8, "clstr": 1}], [87.5, 52.79187817258884, {"seq": 14, "clstr": 1}], [90.09, 55.91939546599496, {"seq": 22, "clstr": 1}], [90.09, 56.63265306122449, {"seq": 22, "clstr": 2}], [89.37, 57.821229050279335, {"seq": 9, "clstr": 1}], [89.37, 52.53807106598985, {"seq": 61, "clstr": 5}], [89.37, 52.67175572519084, {"seq": 149, "clstr": 1}], [83.56, 58.4, {"seq": 9, "clstr": 1}], [83.56, 78.70619946091644, {"seq": 12, "clstr": 1}], [88.52, 53.045685279187815, {"seq": 104, "clstr": 2}], [82.12, 82.78481012658227, {"seq": 44, "clstr": 1}], [82.12, 73.31536388140162, {"seq": 21, "clstr": 1}], [84.65, 57.48663101604278, {"seq": 9, "clstr": 1}], [84.65, 55.55555555555556, {"seq": 7, "clstr": 1}], [89.38, 54.589371980676326, {"seq": 33, "clstr": 1}], [86.76, 51.64556962025316, {"seq": 39, "clstr": 1}], [86.76, 53.15533980582524, {"seq": 29, "clstr": 1}], [85.99, 51.23762376237624, {"seq": 6, "clstr": 1}], [88.55, 73.38935574229691, {"seq": 9, "clstr": 1}], [87.11, 48.01980198019802, {"seq": 57, "clstr": 1}], [83.08, 68.29268292682927, {"seq": 32, "clstr": 1}], [91.22, 52.83505154639175, {"seq": 1478, "clstr": 4}], [91.22, 50.495049504950494, {"seq": 19, "clstr": 1}], [91.22, 52.03045685279187, {"seq": 81, "clstr": 1}], [91.22, 49.754901960784316, {"seq": 15, "clstr": 1}], [88.18, 56.01023017902813, {"seq": 7, "clstr": 1}], [88.18, 53.14009661835749, {"seq": 84, "clstr": 4}], [78.76, 68.70026525198939, {"seq": 10, "clstr": 1}], [91.75, 52.685421994884905, {"seq": 7, "clstr": 1}], [83.62, 76.7379679144385, {"seq": 120, "clstr": 1}], [83.0, 70.47353760445682, {"seq": 29, "clstr": 1}], [84.0, 86.68478260869566, {"seq": 9, "clstr": 1}], [84.0, 47.92176039119804, {"seq": 32, "clstr": 1}], [88.07, 57.97872340425532, {"seq": 744, "clstr": 1}], [87.0, 60.0, {"seq": 176, "clstr": 3}], [87.0, 59.83827493261455, {"seq": 6, "clstr": 1}], [93.26, 48.89502762430939, {"seq": 320, "clstr": 1}], [89.0, 53.045685279187815, {"seq": 15, "clstr": 2}], [90.0, 56.41025641025641, {"seq": 2390, "clstr": 2}], [90.0, 56.12244897959183, {"seq": 15, "clstr": 1}], [90.0, 52.52525252525253, {"seq": 9, "clstr": 1}], [90.0, 52.79187817258884, {"seq": 14, "clstr": 1}], [90.0, 56.70103092783505, {"seq": 109, "clstr": 1}], [91.0, 54.38144329896907, {"seq": 11, "clstr": 1}], [92.23, 53.09278350515464, {"seq": 21, "clstr": 1}], [84.52, 66.7605633802817, {"seq": 14, "clstr": 2}], [86.08, 63.24324324324324, {"seq": 145, "clstr": 2}], [86.08, 66.7605633802817, {"seq": 24, "clstr": 1}], [83.78, 71.94444444444444, {"seq": 185, "clstr": 1}], [87.75, 51.52284263959391, {"seq": 79, "clstr": 1}], [90.34, 52.40506329113924, {"seq": 17, "clstr": 1}], [90.34, 52.53807106598985, {"seq": 48, "clstr": 4}], [89.69, 48.743718592964825, {"seq": 8, "clstr": 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76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
796 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
797 [
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
798 [100, 100, { "clstr": 53, "seq": 20500 }],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
799 [99, 100, { "clstr": 35, "seq": 18000 }],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
800 [90, 95, { "clstr": 1, "seq": 10 }],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
801 ]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
802 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
803 var bootstrap_scores = null ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
804 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
805 {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
806 "Phylum": {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
807 "80": { "clstr": 1, "seq":100 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
808 "90": { "clstr": 2, "seq":400 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
809 "100": { "clstr": 50, "seq":20000 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
810 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
811 "Genus":{
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
812 "80":{ "clstr": 1, "seq":100 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
813 "90":{ "clstr": 2, "seq":400 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
814 "100":{ "clstr": 50, "seq":20000 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
815 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
816 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
817 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
818
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
819
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
820 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
821 //
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
822 // Main
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
823 //
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
824 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
825 $(function() {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
826 // Remove alert
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
827 $('#js-alert').remove();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
828 $('#content').removeClass("hidden");
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
829
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
830 // Load active tab
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
831 taxBySample_load( "tax-distrib" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
832
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
833 // Hide tab if no data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
834 if( alignment_scores == null ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
835 $('#alignment-nav-tab').each( function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
836 $(this).addClass("hidden");
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
837 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
838 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
839 if( bootstrap_scores == null ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
840 $('#bootstrap-nav-tab').each( function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
841 $(this).addClass("hidden");
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
842 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
843 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
844
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
845 // Add tab listener
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
846 $('.nav-tabs a').click(function (e) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
847 e.preventDefault();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
848 $(this).tab('show');
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
849 if( $(this).attr('href') == "#bootstrap-distrib" && $('#bootstrap-distrib').hasClass('disabled') ) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
850 $('#bootstrap').removeClass("disabled");
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
851 bootstrap_score_load( "bootstrap-barplot" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
852 } else if( $(this).attr('href') == "#alignment-distrib" && $('#alignment-distrib').hasClass('disabled') ) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
853 $('#alignment').removeClass("disabled");
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
854 alignment_score_load( "alignment-heatmap" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
855 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
856 })
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
857 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
858 </script>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
859 </head>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
860 <body>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
861 <p id="js-alert" class="alert alert-warning">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
862 javascript is needed to display data.<br />
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
863 If you try to view this data on galaxy please contact your administrator to authorise javascript or download the file to view.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
864 </p>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
865
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
866 <div id="content" class="hidden">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
867 <ul class="nav nav-tabs">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
868 <li role="presentation" class="active"><a href="#tax-distrib">Taxonomy distribution</a></li>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
869 <li role="presentation" id="bootstrap-nav-tab"><a href="#bootstrap-distrib">Bootstrap distribution</a></li>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
870 <li role="presentation" id="alignment-nav-tab"><a href="#alignment-distrib">Alignment distribution</a></li>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
871 </ul>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
872 <div id="tab-content" class="tab-content">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
873 <div id="tax-distrib" role="tabpanel" class="tab-pane active">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
874 <button id="display-global-sunburst" class="btn btn-primary center-block" data-toggle="modal" data-target="#sunburst-modal">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
875 <span class="glyphicon glyphicon-stats" aria-hidden="true"> Display global distribution</span>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
876 </button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
877 <table id="taxBySample-table" class="table table-striped">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
878 <thead>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
879 <tr>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
880 <th class="title">Taxonomies by sample</th>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
881 </tr>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
882 </thead>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
883 <tbody></tbody>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
884 <tfoot>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
885 <tr>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
886 <th>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
887 <span class="table-action">With selection:</span>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
888 <select id="rarefaction-level" name="select" class="table-action fusion-left"></select>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
889 <button id="display-rarefaction" class="btn btn-primary table-action fusion-right disabled" data-toggle="modal" data-target="#rarefaction-modal">Display rarefaction</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
890 <button id="display-spl-sunburst" class="btn btn-primary table-action disabled" data-toggle="modal" data-target="#sunburst-modal">Display distribution</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
891 </th>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
892 </tr>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
893 </tfoot>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
894 </table>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
895 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
896 <div id="bootstrap-distrib" role="tabpanel" class="tab-pane disabled">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
897 <div id="bootstrap-barplot"></div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
898 <div id="set-bootstrap-barplot" class="set-datatype">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
899 <button id="bootstrap-clstr-btn" type="button" class="btn btn-primary btn-md btn-block">by OTUs</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
900 <button id="bootstrap-seq-btn" type="button" class="btn btn-default btn-md btn-block">by sequences</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
901 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
902 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
903 <div id="alignment-distrib" role="tabpanel" class="tab-pane disabled">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
904 <div id="alignment-heatmap"></div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
905 <div id="set-alignment-heatmap" class="set-datatype">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
906 <button id="heatmap-clstr-btn" type="button" class="btn btn-primary btn-md btn-block">by OTUs</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
907 <button id="heatmap-seq-btn" type="button" class="btn btn-default btn-md btn-block">by sequences</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
908 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
909 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
910 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
parents:
diff changeset
911 </div>
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912
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
913 <div class="modal" id="sunburst-modal" tabindex="-1" role="dialog" aria-hidden="true">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
914 <div class="modal-dialog modal-lg">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
915 <div class="modal-content">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
916 <div class="modal-header">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
frogs
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diff changeset
917 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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918 <h4 class="modal-title">Taxa distribution</h4>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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919 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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920 <div class="modal-body">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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921 <div id="sunburst-walktrace"></div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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922 <div id="sunburst-graph"></div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
923 <div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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924 <h4>Detail on selected:</h4>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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925 <div id="sunburst-detail"></div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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926 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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927 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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928 <div class="modal-footer">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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929 <span id="sunburst-menu"></span>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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930 <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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931 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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932 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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933 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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934 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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935 <div class="modal" id="rarefaction-modal" tabindex="-1" role="dialog" aria-hidden="true">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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936 <div class="modal-dialog modal-lg">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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937 <div class="modal-content">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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938 <div class="modal-header">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
939 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">&times;</span></button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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940 <h4 class="modal-title">Rarefaction</h4>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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941 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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942 <div class="modal-body">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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943 <div id="rarefaction-chart"></div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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944 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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945 <div class="modal-footer">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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diff changeset
946 <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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947 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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948 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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949 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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950 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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951 </body>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty
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952 </html>