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comparison test-data/references/07-affiliation_postprocessed.log @ 0:59bc96331073 draft default tip

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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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-1:000000000000 0:59bc96331073
1 ## Application
2 Software: affiliation_postprocess.py (version: 3.1)
3 Command: /home/maria/workspace/git/FROGS/FROGS_master/test/../app/affiliation_postprocess.py --input-biom res/06-affiliation.biom --input-fasta res/04-filters.fasta --reference /home/maria/workspace/git/FROGS/FROGS_master/test/../test/data/Unite_extract_ITS1.fasta --output-biom res/07-affiliation_postprocessed.biom --output-compo res/07-affiliation_postprocessed.compo.tsv --output-fasta res/07-affiliation_postprocessed.fasta --log-file res/07-affiliation_postprocessed.log
4
5 ########################################################################################################
6 # Select smallest reference as affiliation. (select_inclusive_amplicon.py version : )
7 Command:
8 select_inclusive_amplicon.py --ITS-reference /home/maria/workspace/git/FROGS/FROGS_master/test/../test/data/Unite_extract_ITS1.fasta -b res/06-affiliation.biom -o res/1550052874.36_4187_06-affiliation.biom_resolve_inclusiv_its.biom --log-file res/1550052874.36_4187_06-affiliation.biom_resolve_inclusiv_its.log
9
10 Execution:
11 start: 13 Feb 2019 11:14:34
12 end: 13 Feb 2019 11:14:34
13
14 # nb OTU : 86
15 # nb OTU with multiaffiliations : 0
16 # nb OTU with multiaffiliations resolved : 0
17 # nb multiaffiliations removed : 0
18
19 ########################################################################################################
20 # Aggregate OTU that share taxonomic affiliation with at least I% identity and C% coverage (aggregate_affiliated_otus.py version : )
21 Command:
22 aggregate_affiliated_otus.py -b res/1550052874.36_4187_06-affiliation.biom_resolve_inclusiv_its.biom -f res/04-filters.fasta --identity 99.0 --coverage 99.0 --output-biom res/07-affiliation_postprocessed.biom --output-compo res/07-affiliation_postprocessed.compo.tsv --output-fasta res/07-affiliation_postprocessed.fasta --log-file res/1550052874.36_4187_06-affiliation.biom_aggregation.log
23
24 Execution:
25 start: 13 Feb 2019 11:14:34
26 end: 13 Feb 2019 11:14:34
27
28 # nb OTU in : 86
29 # nb OTU out : 86
30 # nb OTU aggregated : 0
31