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planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author frogs
date Thu, 28 Feb 2019 10:14:49 -0500
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## Application
Software: affiliation_postprocess.py (version: 3.1)
Command: /home/maria/workspace/git/FROGS/FROGS_master/test/../app/affiliation_postprocess.py --input-biom res/06-affiliation.biom --input-fasta res/04-filters.fasta --reference /home/maria/workspace/git/FROGS/FROGS_master/test/../test/data/Unite_extract_ITS1.fasta --output-biom res/07-affiliation_postprocessed.biom --output-compo res/07-affiliation_postprocessed.compo.tsv --output-fasta res/07-affiliation_postprocessed.fasta --log-file res/07-affiliation_postprocessed.log

########################################################################################################
# Select smallest reference as affiliation. (select_inclusive_amplicon.py version : )
Command:
	select_inclusive_amplicon.py  --ITS-reference /home/maria/workspace/git/FROGS/FROGS_master/test/../test/data/Unite_extract_ITS1.fasta -b res/06-affiliation.biom -o res/1550052874.36_4187_06-affiliation.biom_resolve_inclusiv_its.biom --log-file res/1550052874.36_4187_06-affiliation.biom_resolve_inclusiv_its.log

Execution:
	start: 13 Feb 2019 11:14:34
	end:   13 Feb 2019 11:14:34

	# nb OTU : 86
	# nb OTU with multiaffiliations : 0
	# nb OTU with multiaffiliations resolved : 0
	# nb multiaffiliations removed : 0

########################################################################################################
# Aggregate OTU that share taxonomic affiliation with at least I% identity and C% coverage (aggregate_affiliated_otus.py version : )
Command:
	aggregate_affiliated_otus.py  -b res/1550052874.36_4187_06-affiliation.biom_resolve_inclusiv_its.biom -f res/04-filters.fasta --identity 99.0 --coverage 99.0 --output-biom res/07-affiliation_postprocessed.biom --output-compo res/07-affiliation_postprocessed.compo.tsv --output-fasta res/07-affiliation_postprocessed.fasta --log-file res/1550052874.36_4187_06-affiliation.biom_aggregation.log

Execution:
	start: 13 Feb 2019 11:14:34
	end:   13 Feb 2019 11:14:34

	# nb OTU in : 86
	# nb OTU out : 86
	# nb OTU aggregated : 0