CLUSTAL 2.1 Multiple Sequence Alignments


Sequence type explicitly set to DNA
Sequence format is Pearson
Sequence 1: c_briggsae-chrII_+_/43862-46313                 60 bp
Sequence 2: c_remanei-Crem_Contig172_-_/123228-124941       60 bp
Sequence 3: c_brenneri-Cbre_Contig60_+_/627772-630087       60 bp
Sequence 4: c_elegans-II_+_/9706834-9708803                 60 bp
Sequence 5: c_briggsae-chrIfooI_+_/43862-46313              60 bp
Sequence 6: c_remanei-Crem_Contig172foo_-_/123228-124941    60 bp
Sequence 7: c_brenneri-Cbre_Contig60gak_+_/627772-630087    60 bp
Sequence 8: c_elegans-II_+_more/9706834-9708803             60 bp
Sequence 9: c_briggsae-chrII_+_bar/43862-46313              60 bp
Sequence 10: c_remanei-Crem_Contig172zot_-_/123228-124941    60 bp
Sequence 11: c_brenneri-Cbre_Contig60fee_+_/627772-630087    60 bp
Sequence 12: c_elegans-II_+_meh/9706834-9708803              60 bp
Start of Pairwise alignments
Aligning...

Sequences (1:2) Aligned. Score:  80
Sequences (1:3) Aligned. Score:  88
Sequences (1:4) Aligned. Score:  83
Sequences (1:5) Aligned. Score:  21
Sequences (1:6) Aligned. Score:  20
Sequences (1:7) Aligned. Score:  23
Sequences (1:8) Aligned. Score:  18
Sequences (1:9) Aligned. Score:  21
Sequences (1:10) Aligned. Score:  16
Sequences (1:11) Aligned. Score:  25
Sequences (1:12) Aligned. Score:  10
Sequences (2:3) Aligned. Score:  85
Sequences (2:4) Aligned. Score:  86
Sequences (2:5) Aligned. Score:  21
Sequences (2:6) Aligned. Score:  20
Sequences (2:7) Aligned. Score:  25
Sequences (2:8) Aligned. Score:  20
Sequences (2:9) Aligned. Score:  36
Sequences (2:10) Aligned. Score:  16
Sequences (2:11) Aligned. Score:  22
Sequences (2:12) Aligned. Score:  17
Sequences (3:4) Aligned. Score:  85
Sequences (3:5) Aligned. Score:  13
Sequences (3:6) Aligned. Score:  20
Sequences (3:7) Aligned. Score:  25
Sequences (3:8) Aligned. Score:  20
Sequences (3:9) Aligned. Score:  36
Sequences (3:10) Aligned. Score:  16
Sequences (3:11) Aligned. Score:  18
Sequences (3:12) Aligned. Score:  25
Sequences (4:5) Aligned. Score:  13
Sequences (4:6) Aligned. Score:  11
Sequences (4:7) Aligned. Score:  20
Sequences (4:8) Aligned. Score:  10
Sequences (4:9) Aligned. Score:  31
Sequences (4:10) Aligned. Score:  17
Sequences (4:11) Aligned. Score:  29
Sequences (4:12) Aligned. Score:  14
Sequences (5:6) Aligned. Score:  73
Sequences (5:7) Aligned. Score:  83
Sequences (5:8) Aligned. Score:  80
Sequences (5:9) Aligned. Score:  31
Sequences (5:10) Aligned. Score:  14
Sequences (5:11) Aligned. Score:  14
Sequences (5:12) Aligned. Score:  12
Sequences (6:7) Aligned. Score:  80
Sequences (6:8) Aligned. Score:  88
Sequences (6:9) Aligned. Score:  26
Sequences (6:10) Aligned. Score:  16
Sequences (6:11) Aligned. Score:  25
Sequences (6:12) Aligned. Score:  12
Sequences (7:8) Aligned. Score:  78
Sequences (7:9) Aligned. Score:  31
Sequences (7:10) Aligned. Score:  10
Sequences (7:11) Aligned. Score:  12
Sequences (7:12) Aligned. Score:  12
Sequences (8:9) Aligned. Score:  31
Sequences (8:10) Aligned. Score:  10
Sequences (8:11) Aligned. Score:  14
Sequences (8:12) Aligned. Score:  12
Sequences (9:10) Aligned. Score:  63
Sequences (9:11) Aligned. Score:  84
Sequences (9:12) Aligned. Score:  78
Sequences (10:11) Aligned. Score:  64
Sequences (10:12) Aligned. Score:  76
Sequences (11:12) Aligned. Score:  46
Guide tree file created:   [/share/shared/galaxy/database/files/002/dataset_2705.dnd]

There are 11 groups
Start of Multiple Alignment

Aligning...
Group 1: Sequences:   2      Score:1045
Group 2: Sequences:   2      Score:1016
Group 3: Sequences:   4      Score:1001
Group 4: Sequences:   2      Score:313
Group 5: Sequences:   2      Score:731
Group 6: Sequences:   4      Score:516
Group 7: Sequences:   8      Score:344
Group 8: Sequences:   2      Score:1016
Group 9: Sequences:   2      Score:1054
Group 10: Sequences:   4      Score:945
Group 11: Sequences:  12      Score:380
Alignment Score 6283
firstres = 1 lastres = 63
FASTA file created!

Fasta-Alignment file created    [/share/shared/galaxy/database/files/002/dataset_2726.dat]